Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20298
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     31   0.97 
12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135     29   3.0  
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    28   5.2  
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905...    28   6.8  

>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 358 ITKINFYNIMHFKNKCFLYITVF 290
           I  ++F+N+ H+   CF+Y++VF
Sbjct: 386 ILSLSFFNLPHYLKTCFMYLSVF 408


>12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135
          Length = 703

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 358 ITKINFYNIMHFKNKCFLYITVF 290
           I  ++F+N+ H    CF+Y++VF
Sbjct: 85  ILSLSFFNLPHHLKTCFMYLSVF 107


>11_06_0458 +
           23808402-23808469,23808800-23809684,23810011-23811961,
           23812210-23812285,23813064-23813072,23813243-23813335,
           23813578-23813581,23813780-23814703,23814926-23815909,
           23816073-23816118,23816376-23816951,23817253-23817798,
           23817820-23818416
          Length = 2252

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 382 TSVIRTNLITKINFYNIMHFKNKCFLYITVF 290
           + V   N+I  +++Y++ H    C LY+++F
Sbjct: 449 SDVEEMNMILSLSYYDLPHHLRTCLLYLSMF 479


>11_03_0025 +
           9047646-9047958,9048150-9048474,9049833-9051828,
           9051991-9052190,9052851-9052899
          Length = 960

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 358 ITKINFYNIMHFKNKCFLYITVF 290
           I  ++FY++ H    CFLY+++F
Sbjct: 352 ILMLSFYDLPHDLKTCFLYLSIF 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,311,606
Number of Sequences: 37544
Number of extensions: 196927
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)