Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20298
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical ...    28   4.6  

>Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical
           protein F34H10.4 protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -2

Query: 385 ITSVIRTNLITKINFYNIMHFKNKCFLYITVFYLFIY*MAYSWTESILNML 233
           I S +    +T I FYNI    N   L  +VF+L +Y  +YS  ++IL+ L
Sbjct: 354 ILSSLNFQYVTPIVFYNIFSVSNSIQLCSSVFFLKVY--SYS-LKTILSAL 401


>AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.6 protein.
          Length = 183

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 506 CLLTVISGIFNCISHANYRVIFNIDNIMS 592
           C+  ++S + N   HA+Y  +FN +N++S
Sbjct: 56  CVRILLSLVHNVFVHASYYNVFNFENLVS 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,467
Number of Sequences: 27780
Number of extensions: 217654
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)