Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20297
         (549 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   0.44 
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   1.8  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.8  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +1

Query: 337 HGGGHSAGRHEQAXVLDKEMKVNWATSPGNQPKTDTSNHHH 459
           H  G  AG H +          ++  S G  P   + +HHH
Sbjct: 16  HQSGSVAGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHH 56


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 539 VRYLTKWSEGPRSMFVS 489
           +RY  KW+EGP S+ VS
Sbjct: 13  IRY--KWNEGPNSVGVS 27


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 539 VRYLTKWSEGPRSMFVS 489
           +RY  KW+EGP S+ VS
Sbjct: 195 IRY--KWNEGPNSVGVS 209


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 256 TNNVHRKTSVTLGSKLPT*RVFGWLSSP 173
           +N++    S++ G +LP    FG ++SP
Sbjct: 37  SNSITVPLSISTGQRLPANFSFGQVNSP 64


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 386  SRTXACSWRPALWPPP 339
            S T    W+P  W PP
Sbjct: 1362 STTNYPEWQPTEWHPP 1377


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 424 NQPKTDTSNHHH 459
           +QP TD S+ HH
Sbjct: 125 SQPPTDNSHVHH 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,955
Number of Sequences: 336
Number of extensions: 2697
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)