BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20297 (549 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 32 0.048 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.085 SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.34 SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.60 SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 3.2 SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 7.3 SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 7.3 SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 9.7 >SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 32.3 bits (70), Expect = 0.048 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +1 Query: 397 KVNWATSPGNQPKT-DTSNHHHIFVGDLSPEI 489 K+NWA+ G + K+ ++ + IFVGDLSP + Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNV 197 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 31.5 bits (68), Expect = 0.085 Identities = 14/20 (70%), Positives = 15/20 (75%) Frame = +3 Query: 195 TLYVGNLDPSVTEVFLCTLF 254 +LYVG LDPSVTE L LF Sbjct: 81 SLYVGELDPSVTEAMLFELF 100 >SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 29.5 bits (63), Expect = 0.34 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 168 NMGDESHP-KTLYVGNLDPSVTEVFLCTLF 254 N D++ P T+YVGNL PS +E L LF Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLF 446 >SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 116 Score = 28.7 bits (61), Expect = 0.60 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 180 ESHPKTLYVGNLDPSVTEVFLCTLFV 257 E T++VGNL PSVTE L F+ Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFI 27 >SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizosaccharomyces pombe|chr 1|||Manual Length = 335 Score = 26.2 bits (55), Expect = 3.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 177 DESHPKTLYVGNLDPSVTEVFLCTL 251 D + T+Y+GNLD VT+ L L Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFEL 30 >SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 204 Score = 25.0 bits (52), Expect = 7.3 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%) Frame = -3 Query: 187 WL--SSPILAYR-NLSITFLTSMNTNIN 113 WL ++ ILAYR NL FLT + N+N Sbjct: 134 WLLKNASILAYRRNLKYIFLTVFSANLN 161 >SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr 3|||Manual Length = 594 Score = 25.0 bits (52), Expect = 7.3 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = +1 Query: 361 RHEQAXVLDKEMKVNWA-TSPGNQPKT-DTSNHHHIFVGDLSPEIETNILRGPSLHLV 528 R + +LDK +W+ +P K D N+ + F +L P+I +I P H++ Sbjct: 84 RRQVVQILDK----SWSFLAPNESAKVIDQGNYEYPFYYELPPDIPDSIEGIPGCHII 137 >SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual Length = 307 Score = 24.6 bits (51), Expect = 9.7 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -1 Query: 66 NE*MKEKCRKQRLELLEKRSR 4 N+ +K+K RK +E+LEK R Sbjct: 287 NKRLKDKTRKSYMEILEKSGR 307 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,180,411 Number of Sequences: 5004 Number of extensions: 42688 Number of successful extensions: 109 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 227943826 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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