Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20297
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    32   0.048
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    31   0.085
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    29   0.34 
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.60 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   3.2  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   7.3  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.3  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           25   9.7  

>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 397 KVNWATSPGNQPKT-DTSNHHHIFVGDLSPEI 489
           K+NWA+  G + K+   ++ + IFVGDLSP +
Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNV 197


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +3

Query: 195 TLYVGNLDPSVTEVFLCTLF 254
           +LYVG LDPSVTE  L  LF
Sbjct: 81  SLYVGELDPSVTEAMLFELF 100


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 168 NMGDESHP-KTLYVGNLDPSVTEVFLCTLF 254
           N  D++ P  T+YVGNL PS +E  L  LF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLF 446


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 180 ESHPKTLYVGNLDPSVTEVFLCTLFV 257
           E    T++VGNL PSVTE  L   F+
Sbjct: 2   ERRKATVHVGNLAPSVTESLLYNAFI 27


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 177 DESHPKTLYVGNLDPSVTEVFLCTL 251
           D +   T+Y+GNLD  VT+  L  L
Sbjct: 6   DRNQDATIYLGNLDEKVTDSILFEL 30


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 187 WL--SSPILAYR-NLSITFLTSMNTNIN 113
           WL  ++ ILAYR NL   FLT  + N+N
Sbjct: 134 WLLKNASILAYRRNLKYIFLTVFSANLN 161


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 361 RHEQAXVLDKEMKVNWA-TSPGNQPKT-DTSNHHHIFVGDLSPEIETNILRGPSLHLV 528
           R +   +LDK    +W+  +P    K  D  N+ + F  +L P+I  +I   P  H++
Sbjct: 84  RRQVVQILDK----SWSFLAPNESAKVIDQGNYEYPFYYELPPDIPDSIEGIPGCHII 137


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 66  NE*MKEKCRKQRLELLEKRSR 4
           N+ +K+K RK  +E+LEK  R
Sbjct: 287 NKRLKDKTRKSYMEILEKSGR 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,411
Number of Sequences: 5004
Number of extensions: 42688
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)