Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20297
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0053 + 22389227-22389613,22390528-22390981,22391618-223916... 39 0.002
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182... 39 0.003
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 38 0.005
03_05_0067 - 20460206-20460703,20461255-20461530 36 0.021
03_01_0525 + 3952095-3952217,3953131-3953614,3953695-3953750,395... 36 0.021
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 36 0.028
07_03_0600 + 19866757-19867218,19867920-19868429 35 0.037
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380... 32 0.35
08_01_0758 - 7193287-7193871,7193965-7194421,7194437-7194655,719... 30 1.4
08_01_0757 - 7164380-7164490,7164585-7165041,7165057-7165275,716... 30 1.4
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 30 1.4
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 1.8
08_02_1282 - 25852113-25852406,25852495-25852668,25852849-258529... 28 4.3
03_05_0066 - 20455976-20456161,20456251-20456347,20456608-204567... 28 5.6
01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972... 28 5.6
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 28 5.6
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 27 7.5
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 27 7.5
09_04_0674 + 19376664-19376859,19377181-19377206,19377794-19377880 27 9.9
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562... 27 9.9
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 27 9.9
>04_04_0053 +
22389227-22389613,22390528-22390981,22391618-22391673,
22391757-22391887,22391976-22392072,22393329-22393484
Length = 426
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 328 YVSHGGGHSAGRHEQAXVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETN 498
+ SHG A ++ V+ D+ K+NWA+ + +++ ++ + IFVGDL+ ++
Sbjct: 152 FYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDYSIFVGDLAADVTDE 211
Query: 499 ILRGPSLHLVRYRTV 543
+L L +YR+V
Sbjct: 212 MLM--ELFANKYRSV 224
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 174 GDESHPKTLYVGNLDPSVTEVFLCTLFVK 260
GD ++ +T+YVG LDP+V+E L F K
Sbjct: 293 GDSTN-RTVYVGGLDPNVSEDELRKAFAK 320
>02_04_0289 +
21615745-21616155,21617417-21617870,21618162-21618217,
21618307-21618437,21618565-21618727
Length = 404
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 328 YVSHGGGHSAGRHEQAXVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETN 498
+ SH A ++ V+ D+ K+NWA+ + + + ++ H IFVGDL+ ++
Sbjct: 160 FFSHASAEKALQNFSGHVMPNTDRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDE 219
Query: 499 ILRGPSLHLVRYRTV 543
+L L +YR+V
Sbjct: 220 MLM--DLFAKKYRSV 232
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 180 ESHPKTLYVGNLDPSVTEVFLCTLFVK 260
+S +T+YVG LDP+ TE L F K
Sbjct: 302 DSTNRTIYVGGLDPNATEDELRKAFAK 328
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 394 MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 489
+KVNWA + + + DTS H +IFVGDL PE+
Sbjct: 226 IKVNWAYA--STQREDTSGHFNIFVGDLCPEV 255
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 35.9 bits (79), Expect = 0.021
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 397 KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
K+NWATS + + D + + IFVGDL+ ++ IL+
Sbjct: 141 KLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQ 177
>03_01_0525 +
3952095-3952217,3953131-3953614,3953695-3953750,
3953942-3954018,3954862-3954958,3955274-3955407,
3955760-3955825,3955954-3956044
Length = 375
Score = 35.9 bits (79), Expect = 0.021
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 397 KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
++NWA+ + + D H IFVGDL+P++ +L+
Sbjct: 90 RLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQ 126
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 35.5 bits (78), Expect = 0.028
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 385 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
D+ ++NWA+ ++D ++ H IFVGDL+ ++ L
Sbjct: 180 DQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTL 219
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 35.1 bits (77), Expect = 0.037
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 382 LDKEMKVNWATS-PGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
+D+ K+NWA+S G + D H IFVGDL+ ++ ++L
Sbjct: 198 VDQLFKLNWASSGAGERRAADDGPEHTIFVGDLASDVTDSML 239
>10_08_0254 +
16236689-16236793,16237760-16237808,16237988-16238076,
16238178-16238234,16238684-16238746,16238828-16238893,
16239520-16239606,16239691-16239784,16240351-16240673,
16241022-16241048,16241065-16241145,16241445-16241476,
16242126-16242266,16242455-16242516,16243170-16243387
Length = 497
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLFVK 260
+ + T YVGNLDP V+E L LFV+
Sbjct: 20 ERNQDATTYVGNLDPQVSEELLWELFVQ 47
>08_01_0758 -
7193287-7193871,7193965-7194421,7194437-7194655,
7194881-7195419
Length = 599
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 446 LVSVFGWLPGLVAQLTFISLSRTXACSWRPAL-WPPPCDT*TREMHTGHFLAPV*SCNLL 270
+ S+ + P ++A + +L T C WPPP + ++ G + V S N++
Sbjct: 157 IASLSAFSPRMIADIKHYTLMPTSCCKVHILPPWPPPTEAKWFQLFVGKQFSLVNSLNII 216
Query: 269 HRLF 258
H +F
Sbjct: 217 HVMF 220
>08_01_0757 -
7164380-7164490,7164585-7165041,7165057-7165275,
7165501-7165757
Length = 347
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 446 LVSVFGWLPGLVAQLTFISLSRTXACSWRPAL-WPPPCDT*TREMHTGHFLAPV*SCNLL 270
+ S+ + P ++A + +L T C WPPP + ++ G + V S N++
Sbjct: 63 IASLSAFSPRMIADIKHYTLMPTSCCKVHILPPWPPPTEAKWFQLFVGKQFSLVNSLNII 122
Query: 269 HRLF 258
H +F
Sbjct: 123 HVMF 126
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 262 RRCKRLQDYTGARK*PVCISRVYVSHGGGHSAGRHEQAXVLDKEMKVNWATSPGNQPKTD 441
R C + G + P C +R G G E+ V D E + NW +Q +
Sbjct: 67 RDCYEYERREGTQNCPQCKTRFKRLKGCARVPGDEEEEDVDDLENEFNWRDKTDSQYVAE 126
Query: 442 TSNHHHIFVG 471
+ H H+ G
Sbjct: 127 SMLHGHMSYG 136
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 177 DESHPKT--LYVGNLDPSVTEVFLCTLF 254
D+ P+T LYVGNL P V E FL F
Sbjct: 191 DDGDPQTTNLYVGNLSPKVDENFLMRTF 218
>08_02_1282 -
25852113-25852406,25852495-25852668,25852849-25852940,
25853465-25853587,25853691-25853721,25854295-25854434,
25854871-25854932,25855027-25855103,25855766-25855868,
25856146-25856207,25857213-25857374
Length = 439
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
D S +++YVGN+ P+VTE L +F
Sbjct: 68 DPSTCRSVYVGNVHPNVTESLLIEVF 93
>03_05_0066 -
20455976-20456161,20456251-20456347,20456608-20456738,
20456814-20456869,20457498-20457543
Length = 171
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 105 RLILILVFIDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLF 254
RL +V + + + + + + T++VG LDPSVT+ L F
Sbjct: 4 RLTTSIVHVSLTSTYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQAF 53
>01_07_0074 -
40894916-40895754,40896322-40896691,40897239-40897291,
40897456-40897593,40897646-40897716,40898655-40898900,
40899205-40899386,40899494-40899697
Length = 700
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 340 GGGHSAGRHEQAXVLDKEMK--VNWATSPGNQPKTDTSNHHH 459
G H+ G + V +E K V A G QPK T +HHH
Sbjct: 150 GAAHTVGVRCPSQVPQQEEKPAVTAAAVLGEQPKGATGDHHH 191
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 343 GGHSAGRHEQAXVLDKEMKVNWATSPGNQPKT 438
G + +GR Q + D V W GN+PKT
Sbjct: 41 GWYYSGRDGQYYIYDNGNYVPWTPDAGNEPKT 72
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 382 LDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
+++ ++NWA S G K D + + IFVGDL+ ++ IL+
Sbjct: 164 VEQTYRLNWA-SAGE--KRDDTPDYTIFVGDLAADVTDYILQ 202
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -3
Query: 274 FYIAYLTNNVHRK-TSVTLGSKLPT*RVFGWLSSPILAYRNLSITFL 137
+Y L N+H T + L +P VFGWL + R IT L
Sbjct: 54 YYHGELPRNIHAAVTGIALCGTVPGQLVFGWLGDKMGRKRVYGITLL 100
>09_04_0674 + 19376664-19376859,19377181-19377206,19377794-19377880
Length = 102
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/33 (27%), Positives = 13/33 (39%)
Frame = -2
Query: 428 WLPGLVAQLTFISLSRTXACSWRPALWPPPCDT 330
W+ GL + + WR LWP C +
Sbjct: 26 WVIGLACVFLLVGFVTNLSVIWRAILWPASCSS 58
>04_04_1223 +
31851545-31852609,31854314-31854773,31856201-31856250,
31856333-31856463,31856569-31856665,31856759-31856950,
31857121-31857123
Length = 665
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 135 VKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLF 254
V++ + + A ++ + T++VG LDP+VTE L +F
Sbjct: 505 VQERVPNAQGAQSENDPNNTTIFVGGLDPNVTEDVLKQVF 544
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 192 KTLYVGNLDPSVTEVFLCTLFVK 260
+T+Y+GNLD VTE L + ++
Sbjct: 7 RTVYIGNLDEKVTERILYEILIQ 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,144,978
Number of Sequences: 37544
Number of extensions: 284844
Number of successful extensions: 721
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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