Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20297
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   1e-10
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             30   1.4  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +1

Query: 265 RCKRLQDYTGARK*PVCISRVYVSHGGGHSAG-RHEQAXVLDKEMKVNWATSPGNQPKTD 441
           RCK +   T   K P C    + +H     A  R +Q  V+DK++KVNWAT+     + D
Sbjct: 397 RCKMINSPTD--KGPYCFVE-FETHADAQEAKFRMDQRTVMDKKLKVNWATNHPGMKRGD 453

Query: 442 TSNHHHIFVGDLSPEIETNILR 507
           T+NH HIFVGDL+  ++  +LR
Sbjct: 454 TNNHFHIFVGDLAENVDNALLR 475



 Score = 35.1 bits (77), Expect = 0.038
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 180 ESHPKTLYVGNLDPSVTEVFLCTLFVK*AM*KVAR 284
           E   ++LYVGNLDP  T+  +C++F K A  KV R
Sbjct: 365 EEENRSLYVGNLDPKCTQELICSIFNKIA--KVVR 397


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 263 GDVKGCKIIREPGNDPYAFLEF 328
           G+V    I ++PGN+PYAF++F
Sbjct: 273 GEVIDVDIKKQPGNNPYAFVQF 294


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 539  VRYLTKWSEGPRSMFVSISGDRSPTN 462
            ++ L  +SEGP S  +S+ G RSPT+
Sbjct: 3235 MKTLESFSEGPTSGELSLKGHRSPTS 3260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,468,535
Number of Sequences: 59808
Number of extensions: 331857
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)