Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20297
         (549 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    23   5.0  
AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           23   8.8  

>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 199 RVFGWLSSPILAYRNLSITFLTSMNTNININRLTTCY 89
           R F  L   +L +R  S+T L  +   +NI +L  CY
Sbjct: 72  RQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKL--CY 106


>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 424 NQPKTDTSNHHHIFVG 471
           N P    +NHH +FVG
Sbjct: 2   NIPARHGANHHELFVG 17


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,297
Number of Sequences: 2352
Number of extensions: 11853
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)