Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20297
(549 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M96954-1|AAA36384.1| 375|Homo sapiens nucleolysin TIAR protein. 71 4e-12
AY633610-1|AAV33303.1| 374|Homo sapiens aging-associated gene 7... 71 4e-12
D64015-1|BAA21559.1| 265|Homo sapiens T-cluster binding protein... 66 6e-11
BC015944-1|AAH15944.1| 214|Homo sapiens TIA1 protein protein. 56 1e-07
AC016700-3|AAX93193.1| 386|Homo sapiens unknown protein. 56 1e-07
AB209211-1|BAD92448.1| 464|Homo sapiens TIA1 protein variant pr... 56 1e-07
BC000680-1|AAH00680.1| 287|Homo sapiens tRNA selenocysteine ass... 35 0.22
AL513497-3|CAI22288.1| 287|Homo sapiens tRNA selenocysteine ass... 35 0.22
AK000510-1|BAA91217.1| 287|Homo sapiens protein ( Homo sapiens ... 35 0.22
AL136089-3|CAI20008.1| 146|Homo sapiens molybdenum cofactor syn... 31 3.5
AK124283-1|BAC85825.1| 306|Homo sapiens protein ( Homo sapiens ... 29 8.1
>M96954-1|AAA36384.1| 375|Homo sapiens nucleolysin TIAR protein.
Length = 375
Score = 70.5 bits (165), Expect = 4e-12
Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = +1
Query: 196 LSTSVIWTRVSQKFSYVR-CLSNRRCKRLQDYTGARK*PVCISRVYVSHGGGHSAGRHEQ 372
LS V + Q FS + C S CK + ++T P C Y +
Sbjct: 16 LSRDVTEVLILQLFSQIGPCKS---CKMITEHTSND--PYCFVEFYEHRDAAAALAAMNG 70
Query: 373 AXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
+L KE+KVNWAT+P +Q K DTSNH H+FVGDLSPEI T ++
Sbjct: 71 RKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIK 114
Score = 37.1 bits (82), Expect = 0.041
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 171 MGDESHPKTLYVGNLDPSVTEVFLCTLF 254
M D+ P+TLYVGNL VTEV + LF
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLF 29
>AY633610-1|AAV33303.1| 374|Homo sapiens aging-associated gene 7
protein protein.
Length = 374
Score = 70.5 bits (165), Expect = 4e-12
Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = +1
Query: 196 LSTSVIWTRVSQKFSYVR-CLSNRRCKRLQDYTGARK*PVCISRVYVSHGGGHSAGRHEQ 372
LS V + Q FS + C S CK + ++T P C Y +
Sbjct: 16 LSRDVTEVLILQLFSQIGPCKS---CKMITEHTSND--PYCFVEFYEHRDAAAALAAMNG 70
Query: 373 AXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
+L KE+KVNWAT+P +Q K DTSNH H+FVGDLSPEI T ++
Sbjct: 71 RKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIK 114
Score = 37.1 bits (82), Expect = 0.041
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 171 MGDESHPKTLYVGNLDPSVTEVFLCTLF 254
M D+ P+TLYVGNL VTEV + LF
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLF 29
>D64015-1|BAA21559.1| 265|Homo sapiens T-cluster binding protein
protein.
Length = 265
Score = 66.5 bits (155), Expect = 6e-11
Identities = 31/67 (46%), Positives = 39/67 (58%)
Frame = +1
Query: 307 PVCISRVYVSHGGGHSAGRHEQAXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPE 486
P C Y + +L KE+KVNWAT+P +Q K DTSNH H+FVGDLSPE
Sbjct: 10 PYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPE 68
Query: 487 IETNILR 507
I T ++
Sbjct: 69 ITTEDIK 75
>BC015944-1|AAH15944.1| 214|Homo sapiens TIA1 protein protein.
Length = 214
Score = 55.6 bits (128), Expect = 1e-07
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Frame = +1
Query: 196 LSTSVIWTRVSQKFSYVRCLSNRRCKRLQDYTGARK*PVCISRVYVSHGGGHSAGRHEQA 375
LS V + Q FS + N CK + D G P C + +
Sbjct: 14 LSRDVTEALILQLFSQIGPCKN--CKMIMDTAGND--PYCFVEFHEHRHAAAALAAMNGR 69
Query: 376 XVLDKEMKVNWATSPGNQPKTDTS----------NHHHIFVGDLSPEIETNILR 507
++ KE+KVNWAT+P +Q K +S +H H+FVGDLSPEI T ++
Sbjct: 70 KIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 123
Score = 33.1 bits (72), Expect = 0.66
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
++ PKTLYVGNL VTE + LF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLF 27
>AC016700-3|AAX93193.1| 386|Homo sapiens unknown protein.
Length = 386
Score = 55.6 bits (128), Expect = 1e-07
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Frame = +1
Query: 196 LSTSVIWTRVSQKFSYVRCLSNRRCKRLQDYTGARK*PVCISRVYVSHGGGHSAGRHEQA 375
LS V + Q FS + N CK + D G P C + +
Sbjct: 14 LSRDVTEALILQLFSQIGPCKN--CKMIMDTAGND--PYCFVEFHEHRHAAAALAAMNGR 69
Query: 376 XVLDKEMKVNWATSPGNQPKTDTS----------NHHHIFVGDLSPEIETNILR 507
++ KE+KVNWAT+P +Q K +S +H H+FVGDLSPEI T ++
Sbjct: 70 KIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 123
Score = 33.1 bits (72), Expect = 0.66
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
++ PKTLYVGNL VTE + LF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLF 27
>AB209211-1|BAD92448.1| 464|Homo sapiens TIA1 protein variant
protein.
Length = 464
Score = 55.6 bits (128), Expect = 1e-07
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Frame = +1
Query: 196 LSTSVIWTRVSQKFSYVRCLSNRRCKRLQDYTGARK*PVCISRVYVSHGGGHSAGRHEQA 375
LS V + Q FS + N CK + D G P C + +
Sbjct: 52 LSRDVTEALILQLFSQIGPCKN--CKMIMDTAGND--PYCFVEFHEHRHAAAALAAMNGR 107
Query: 376 XVLDKEMKVNWATSPGNQPKTDTS----------NHHHIFVGDLSPEIETNILR 507
++ KE+KVNWAT+P +Q K +S +H H+FVGDLSPEI T ++
Sbjct: 108 KIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 161
Score = 33.9 bits (74), Expect = 0.38
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = +3
Query: 165 ANMGDESHPKTLYVGNLDPSVTEVFLCTLF 254
A M DE PKTLYVGNL VTE + LF
Sbjct: 37 AAMEDEM-PKTLYVGNLSRDVTEALILQLF 65
>BC000680-1|AAH00680.1| 287|Homo sapiens tRNA selenocysteine
associated protein 1 protein.
Length = 287
Score = 34.7 bits (76), Expect = 0.22
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 388 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
K K+N+AT G QP D S + +FVGDL+P+++ +L
Sbjct: 77 KRFKLNYATY-GKQP--DNSPEYSLFVGDLTPDVDDGML 112
>AL513497-3|CAI22288.1| 287|Homo sapiens tRNA selenocysteine
associated protein (SECP43) protein.
Length = 287
Score = 34.7 bits (76), Expect = 0.22
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 388 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
K K+N+AT G QP D S + +FVGDL+P+++ +L
Sbjct: 77 KRFKLNYATY-GKQP--DNSPEYSLFVGDLTPDVDDGML 112
>AK000510-1|BAA91217.1| 287|Homo sapiens protein ( Homo sapiens
cDNA FLJ20503 fis, clone KAT09346. ).
Length = 287
Score = 34.7 bits (76), Expect = 0.22
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 388 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
K K+N+AT G QP D S + +FVGDL+P+++ +L
Sbjct: 77 KRFKLNYATY-GKQP--DNSPEYSLFVGDLTPDVDDGML 112
>AL136089-3|CAI20008.1| 146|Homo sapiens molybdenum cofactor
synthesis 1 protein.
Length = 146
Score = 30.7 bits (66), Expect = 3.5
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 425 LPGLVAQLTFISLSRTXACS-WRPALWPPPCDT*TREMHTGHFLAPV*SC 279
+PG Q++FI+ T A S W LWPP +T H GH +P SC
Sbjct: 41 IPGFQGQISFITSILTVARSCWPLFLWPPSSETGC--AHMGH--SPKDSC 86
>AK124283-1|BAC85825.1| 306|Homo sapiens protein ( Homo sapiens
cDNA FLJ42289 fis, clone TLIVE2006529. ).
Length = 306
Score = 29.5 bits (63), Expect = 8.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 197 SLRR*FGPECHRSFPMYVVCQIGDVKGCKIIREP 298
SLRR G H+S P + ++GD++G ++ +EP
Sbjct: 171 SLRRGLGTRAHQS-PANEIPELGDLRGSRLAQEP 203
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,347,240
Number of Sequences: 237096
Number of extensions: 1579861
Number of successful extensions: 3120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3107
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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