Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20297
(549 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13038-1|AAA02941.1| 465|Drosophila melanogaster polyadenylate-... 84 1e-16
L13037-1|AAA28828.1| 465|Drosophila melanogaster polyadenylate-... 84 1e-16
AY070612-1|AAL48083.1| 470|Drosophila melanogaster RE71384p pro... 84 1e-16
AE014297-3445|AAN13978.1| 470|Drosophila melanogaster CG5422-PD... 84 1e-16
AE014297-3444|AAN13977.1| 464|Drosophila melanogaster CG5422-PF... 84 1e-16
AE014297-3443|AAF56224.1| 464|Drosophila melanogaster CG5422-PC... 84 1e-16
AE014297-3442|AAF56225.1| 464|Drosophila melanogaster CG5422-PB... 84 1e-16
S51743-1|AAB24632.1| 41|Drosophila melanogaster RNA recognitio... 44 2e-04
BT030266-1|ABN49405.1| 166|Drosophila melanogaster IP18392p pro... 37 0.016
BT025832-1|ABF85732.1| 791|Drosophila melanogaster IP09238p pro... 31 1.4
AY121663-1|AAM51990.1| 505|Drosophila melanogaster RE10833p pro... 31 1.4
AE014297-4216|AAF56774.2| 505|Drosophila melanogaster CG12870-P... 31 1.4
AY113365-1|AAM29370.1| 366|Drosophila melanogaster LD23375p pro... 28 7.2
AE014297-1256|AAF54604.1| 366|Drosophila melanogaster CG6672-PA... 28 7.2
>L13038-1|AAA02941.1| 465|Drosophila melanogaster
polyadenylate-binding protein protein.
Length = 465
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 382 LDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
L+KE+KVNWATSPGNQPKTD S+HHHIFVGDLSPEIET LR
Sbjct: 71 LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLR 112
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 260 IGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 376
+G VK CKIIREPGNDPYAF+E++ + MNKR
Sbjct: 30 MGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
DES PKTLYVGNLD SV+E L LF
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALF 27
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AFAPFGEISNCRI
Sbjct: 114 AFAPFGEISNCRI 126
>L13037-1|AAA28828.1| 465|Drosophila melanogaster
polyadenylate-binding protein protein.
Length = 465
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 382 LDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
L+KE+KVNWATSPGNQPKTD S+HHHIFVGDLSPEIET LR
Sbjct: 71 LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLR 112
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 260 IGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 376
+G VK CKIIREPGNDPYAF+E++ + MNKR
Sbjct: 30 MGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
DES PKTLYVGNLD SV+E L LF
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALF 27
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AFAPFGEISNCRI
Sbjct: 114 AFAPFGEISNCRI 126
>AY070612-1|AAL48083.1| 470|Drosophila melanogaster RE71384p
protein.
Length = 470
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 382 LDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
L+KE+KVNWATSPGNQPKTD S+HHHIFVGDLSPEIET LR
Sbjct: 71 LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLR 112
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 260 IGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 376
+G VK CKIIREPGNDPYAF+E++ + MNKR
Sbjct: 30 MGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
DES PKTLYVGNLD SV+E L LF
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALF 27
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AFAPFGEISNCRI
Sbjct: 114 AFAPFGEISNCRI 126
>AE014297-3445|AAN13978.1| 470|Drosophila melanogaster CG5422-PD,
isoform D protein.
Length = 470
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 382 LDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
L+KE+KVNWATSPGNQPKTD S+HHHIFVGDLSPEIET LR
Sbjct: 71 LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLR 112
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 260 IGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 376
+G VK CKIIREPGNDPYAF+E++ + MNKR
Sbjct: 30 MGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
DES PKTLYVGNLD SV+E L LF
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALF 27
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AFAPFGEISNCRI
Sbjct: 114 AFAPFGEISNCRI 126
>AE014297-3444|AAN13977.1| 464|Drosophila melanogaster CG5422-PF,
isoform F protein.
Length = 464
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 382 LDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
L+KE+KVNWATSPGNQPKTD S+HHHIFVGDLSPEIET LR
Sbjct: 71 LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLR 112
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 260 IGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 376
+G VK CKIIREPGNDPYAF+E++ + MNKR
Sbjct: 30 MGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
DES PKTLYVGNLD SV+E L LF
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALF 27
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AFAPFGEISNCRI
Sbjct: 114 AFAPFGEISNCRI 126
>AE014297-3443|AAF56224.1| 464|Drosophila melanogaster CG5422-PC,
isoform C protein.
Length = 464
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 382 LDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
L+KE+KVNWATSPGNQPKTD S+HHHIFVGDLSPEIET LR
Sbjct: 71 LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLR 112
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 260 IGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 376
+G VK CKIIREPGNDPYAF+E++ + MNKR
Sbjct: 30 MGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
DES PKTLYVGNLD SV+E L LF
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALF 27
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AFAPFGEISNCRI
Sbjct: 114 AFAPFGEISNCRI 126
>AE014297-3442|AAF56225.1| 464|Drosophila melanogaster CG5422-PB,
isoform B protein.
Length = 464
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +1
Query: 382 LDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
L+KE+KVNWATSPGNQPKTD S+HHHIFVGDLSPEIET LR
Sbjct: 71 LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLR 112
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 260 IGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 376
+G VK CKIIREPGNDPYAF+E++ + MNKR
Sbjct: 30 MGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 177 DESHPKTLYVGNLDPSVTEVFLCTLF 254
DES PKTLYVGNLD SV+E L LF
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALF 27
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AFAPFGEISNCRI
Sbjct: 114 AFAPFGEISNCRI 126
>S51743-1|AAB24632.1| 41|Drosophila melanogaster RNA recognition
motif-type RNA-binding protein protein.
Length = 41
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 260 IGDVKGCKIIREPGNDPYAFL 322
+G VK CKIIREPGNDPYAF+
Sbjct: 21 MGPVKSCKIIREPGNDPYAFI 41
>BT030266-1|ABN49405.1| 166|Drosophila melanogaster IP18392p
protein.
Length = 166
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 316 ISRVYVSHGGGHSAGRHEQAXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIET 495
++ ++ H G + +Q + ++ + GN K + HIFVGDLS EIET
Sbjct: 53 VTAAHLQHNGQQQHSQQQQQQQMSQQQQQQQQQLVGNNSKPE---QFHIFVGDLSAEIET 109
Query: 496 NILRGP 513
R P
Sbjct: 110 QQRRHP 115
>BT025832-1|ABF85732.1| 791|Drosophila melanogaster IP09238p
protein.
Length = 791
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1
Query: 457 HIFVGDLSPEIETNILR 507
HIFVGDLS EIET LR
Sbjct: 453 HIFVGDLSSEIETQQLR 469
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AF PFGEIS+CR+
Sbjct: 471 AFTPFGEISDCRV 483
>AY121663-1|AAM51990.1| 505|Drosophila melanogaster RE10833p
protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1
Query: 457 HIFVGDLSPEIETNILR 507
HIFVGDLS EIET LR
Sbjct: 167 HIFVGDLSSEIETQQLR 183
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AF PFGEIS+CR+
Sbjct: 185 AFTPFGEISDCRV 197
>AE014297-4216|AAF56774.2| 505|Drosophila melanogaster CG12870-PA
protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1
Query: 457 HIFVGDLSPEIETNILR 507
HIFVGDLS EIET LR
Sbjct: 167 HIFVGDLSSEIETQQLR 183
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 510 AFAPFGEISNCRI 548
AF PFGEIS+CR+
Sbjct: 185 AFTPFGEISDCRV 197
>AY113365-1|AAM29370.1| 366|Drosophila melanogaster LD23375p
protein.
Length = 366
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 334 SHGGGHSAGR---HEQAXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
SHGGGH G H A + G+ D+ H H GD+S + I+
Sbjct: 172 SHGGGHGHGHSHGHTDAG-NHNHQAITLDNGHGHSHDHDSHGHSH---GDMSGS-NSQIM 226
Query: 505 RGPSLHLV 528
RG LH++
Sbjct: 227 RGVFLHIL 234
>AE014297-1256|AAF54604.1| 366|Drosophila melanogaster CG6672-PA
protein.
Length = 366
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 334 SHGGGHSAGR---HEQAXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
SHGGGH G H A + G+ D+ H H GD+S + I+
Sbjct: 172 SHGGGHGHGHSHGHTDAG-NHNHQAITLDNGHGHSHDHDSHGHSH---GDMSGS-NSQIM 226
Query: 505 RGPSLHLV 528
RG LH++
Sbjct: 227 RGVFLHIL 234
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,671,374
Number of Sequences: 53049
Number of extensions: 491738
Number of successful extensions: 1354
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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