Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20297
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-6|AAN63456.1|  305|Caenorhabditis elegans Hypothetical pr...    60   1e-09
U28944-5|AAK68191.1|  408|Caenorhabditis elegans Hypothetical pr...    60   1e-09
U28944-4|AAK68192.1|  376|Caenorhabditis elegans Hypothetical pr...    56   2e-08
U28944-7|AAN63457.1|  295|Caenorhabditis elegans Hypothetical pr...    52   2e-07
AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical ...    49   3e-06
Z78536-3|CAB01717.2|  360|Caenorhabditis elegans Hypothetical pr...    41   5e-04
U28944-8|AAK68193.1|  103|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical p...    27   8.9  
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U28944-6|AAN63456.1|  305|Caenorhabditis elegans Hypothetical
           protein C18A3.5e protein.
          Length = 305

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +1

Query: 379 VLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILR 507
           +LD+EMKVNWA  PG Q  K DT+ H H+FVGDLS E++   LR
Sbjct: 6   LLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLR 49


>U28944-5|AAK68191.1|  408|Caenorhabditis elegans Hypothetical
           protein C18A3.5a protein.
          Length = 408

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +1

Query: 379 VLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILR 507
           +LD+EMKVNWA  PG Q  K DT+ H H+FVGDLS E++   LR
Sbjct: 109 LLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLR 152



 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = +2

Query: 257 QIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 376
           QIG V   K+I +  NDPYAF+EF+ H         MNKR
Sbjct: 68  QIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMNKR 107



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 NMGDESHPKTLYVGNLDPSVTEVFLCTLF 254
           N  DE  P+TLYVGNLD +VTE F+ TLF
Sbjct: 40  NGSDE--PRTLYVGNLDSTVTEDFIATLF 66


>U28944-4|AAK68192.1|  376|Caenorhabditis elegans Hypothetical
           protein C18A3.5b protein.
          Length = 376

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 358 GRHEQAXVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILR 507
           G   +  V+  EMKVNWA  PG Q  K DT+ H H+FVGDLS E++   LR
Sbjct: 70  GSVTKTKVIFDEMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLR 120



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 NMGDESHPKTLYVGNLDPSVTEVFLCTLF 254
           N  DE  P+TLYVGNLD +VTE F+ TLF
Sbjct: 40  NGSDE--PRTLYVGNLDSTVTEDFIATLF 66


>U28944-7|AAN63457.1|  295|Caenorhabditis elegans Hypothetical
           protein C18A3.5f protein.
          Length = 295

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +1

Query: 394 MKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILR 507
           MKVNWA  PG Q  K DT+ H H+FVGDLS E++   LR
Sbjct: 1   MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLR 39


>AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical
           protein Y46G5A.13 protein.
          Length = 434

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +1

Query: 364 HEQAXVLDKEMKVNWATSPG----NQPKTDTSNHHHIFVGDLSPEIETNILR 507
           H    +L+KEM V WA  P     N+ K +TS H H+FVGDL  EI++  LR
Sbjct: 98  HNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLR 149



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +3

Query: 189 PKTLYVGNLDPSVTEVFLCTLF 254
           P+TL+V NLDP++T+ FL TLF
Sbjct: 39  PRTLFVANLDPAITDEFLATLF 60



 Score = 35.1 bits (77), Expect = 0.034
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +2

Query: 257 QIGDVKGCKIIREPGNDPYAFLEFTCH 337
           QIG V   KII E  NDPYAF+EF+ H
Sbjct: 62  QIGAVMKAKIIFEGLNDPYAFVEFSDH 88


>Z78536-3|CAB01717.2|  360|Caenorhabditis elegans Hypothetical
           protein C07A4.1 protein.
          Length = 360

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +1

Query: 373 AXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
           A VL +   ++ A+ P  + + DTS H H+FVGDLS ++   +L+
Sbjct: 108 AIVLQESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLK 152


>U28944-8|AAK68193.1|  103|Caenorhabditis elegans Hypothetical
           protein C18A3.5c protein.
          Length = 103

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 NMGDESHPKTLYVGNLDPSVTEVFLCTLF 254
           N  DE  P+TLYVGNLD +VTE F+ TLF
Sbjct: 40  NGSDE--PRTLYVGNLDSTVTEDFIATLF 66


>Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical
           protein T01C3.8 protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 337 VTRKLEKCIRVISWLPYNLATFYIAYLTNNVHRKTS 230
           +TR  E CIRV+ +L   + T  +  L  N+H+ T+
Sbjct: 376 ITRTTETCIRVMMYLRLKMQTLAV-NLRYNIHKITT 410


>Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical
           protein C14A4.12b protein.
          Length = 697

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -3

Query: 301 SWLPYNLATFYIAYL---TNNVHRKTSVTL-GSKLPT*RVFGWLSSPILAYRNLSITFLT 134
           SWL  NLAT  + +L   +N + + TS  L G+ +     + WL   I+   + +  F  
Sbjct: 262 SWLVINLATGILVFLSSRSNQIVQTTSFVLSGATIYPSFFYAWLDYRIMTASHSNFLFRQ 321

Query: 133 SM 128
           SM
Sbjct: 322 SM 323


>Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical
           protein C14A4.12a protein.
          Length = 717

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -3

Query: 301 SWLPYNLATFYIAYL---TNNVHRKTSVTL-GSKLPT*RVFGWLSSPILAYRNLSITFLT 134
           SWL  NLAT  + +L   +N + + TS  L G+ +     + WL   I+   + +  F  
Sbjct: 282 SWLVINLATGILVFLSSRSNQIVQTTSFVLSGATIYPSFFYAWLDYRIMTASHSNFLFRQ 341

Query: 133 SM 128
           SM
Sbjct: 342 SM 343


>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
           protein C34E10.8 protein.
          Length = 1024

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 2   ARDRFSRSSKRCLRHFSFIYSLSNVISDEITRC*AINIDISVHRR 136
           +++  ++   RC  H  F  +L N    E+ RC A N D  + RR
Sbjct: 50  SKEELAKHGGRCEEHVEFSKTLENNHKKEVMRCHAEN-DSKMQRR 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,162
Number of Sequences: 27780
Number of extensions: 247899
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)