Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20297
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.51 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.2  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 449 LLVSVFGWLPGLVAQLTFISLSRTXACSWRPALWPPP 339
           L V+V  W  G+ A LT+ISL      S  P L P P
Sbjct: 79  LFVTVPRWRNGIPATLTYISLDTNRGGS--PKLTPYP 113


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 539 VRYLTKWSEGPRSMFVS 489
           +RY  KW+EGP S+ VS
Sbjct: 166 IRY--KWNEGPNSVGVS 180


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 539 VRYLTKWSEGPRSMFVS 489
           +RY  KW+EGP S+ VS
Sbjct: 105 IRY--KWNEGPNSVGVS 119


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 544 RQFDISPNGAKALGVCLFRFLETDRPRIC 458
           ++ ++SPN   A+ VC+ +     RP +C
Sbjct: 91  KECELSPNSTIAVCVCMRKCPRRHRP-VC 118


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 35  CLRHFSFIYSLSNVISDEITRC*AINIDISVHRR*KSNRQIT 160
           C R+FS  YSL     D+  +   + +    +RR ++   +T
Sbjct: 11  CRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLT 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,087
Number of Sequences: 438
Number of extensions: 3056
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)