Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20297
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 46 2e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 46 2e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 7e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 44 9e-05
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.024
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 35 0.041
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 35 0.041
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 34 0.072
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 33 0.17
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.17
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 32 0.29
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 32 0.29
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 31 0.67
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 0.89
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 30 0.89
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 30 0.89
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 29 1.5
At1g07590.1 68414.m00812 pentatricopeptide (PPR) repeat-containi... 28 4.7
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 27 6.2
At2g22250.2 68415.m02642 aminotransferase class I and II family ... 27 6.2
At2g22250.1 68415.m02641 aminotransferase class I and II family ... 27 6.2
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 27 8.3
At1g42367.1 68414.m04881 hypothetical protein 27 8.3
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1
Query: 358 GRHEQAXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 489
GRH + + MKVNWA + G + DTS+H +IFVGDLSPE+
Sbjct: 122 GRH----IFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEV 159
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +3
Query: 180 ESHPK--TLYVGNLDPSVTEVFLCTLF 254
E++P+ T+YVGNL P VT++ L LF
Sbjct: 267 ENNPQFTTVYVGNLSPEVTQLDLHRLF 293
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1
Query: 358 GRHEQAXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 489
GRH + + MKVNWA + G + DTS+H +IFVGDLSPE+
Sbjct: 122 GRH----IFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEV 159
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +3
Query: 180 ESHPK--TLYVGNLDPSVTEVFLCTLF 254
E++P+ T+YVGNL P VT++ L LF
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLF 289
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +1
Query: 358 GRHEQAXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
GRH + + +KVNWA + G + DTS+H +IFVGDLSPE+ +L
Sbjct: 113 GRH----LFGQPIKVNWAYASGQ--REDTSSHFNIFVGDLSPEVTDAML 155
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 358 GRHEQAXVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 489
GRH + + +KVNWA + G + DTS+H +IFVGDLSPE+
Sbjct: 118 GRH----LFGQPIKVNWAYATGQ--REDTSSHFNIFVGDLSPEV 155
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 397 KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 507
++NWA S G+ K D H IFVGDL+P++ +L+
Sbjct: 98 RLNWA-SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQ 133
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 385 DKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
D+ ++NWA+ S G + + IFVGDLSP++ N+L
Sbjct: 173 DQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLL 213
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 385 DKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
D+ ++NWA+ S G + + IFVGDLSP++ N+L
Sbjct: 173 DQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLL 213
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 33.9 bits (74), Expect = 0.072
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 171 MGDESHPKT-LYVGNLDPSVTEVFLCTLF 254
+ D++HP + LY G+LDP VTE L LF
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLF 69
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 385 DKEMKVNWATSPGNQPKTDTSNHHH-IFVGDLSPEIETNIL 504
++ ++NWA + + + T H IFVGDL+PE+ +L
Sbjct: 130 EQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYML 170
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 385 DKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
D+ ++NWA+ S G + + +FVGDLSP++ T++L
Sbjct: 178 DQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV-TDVL 217
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 385 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
++ ++NWA + + H +FVGDL+P++ ++L
Sbjct: 150 EQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHML 189
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 ESHPKT-LYVGNLDPSVTEVFLCTLF 254
++HP + LYVG+LDPSV E L LF
Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLF 65
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 30.7 bits (66), Expect = 0.67
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 385 DKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
++ ++NWA+ S G + ++ IFVGDL+P++ +L
Sbjct: 189 EQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVL 229
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 385 DKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
D+ ++NWA+ S G + + IFVGDL+P++ +L
Sbjct: 175 DQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALL 215
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 385 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
D+ ++NWA S + K D S + IFVGDL+ ++ IL
Sbjct: 133 DQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 385 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 504
D+ ++NWA S + K D S + IFVGDL+ ++ IL
Sbjct: 133 DQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 177 DESHPKT--LYVGNLDPSVTEVFLCTLF 254
D+ P+T LYVGNL P V E FL F
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTF 199
>At1g07590.1 68414.m00812 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 534
Score = 27.9 bits (59), Expect = 4.7
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -3
Query: 394 FPCRGXSLVHGGQRCGRR-RVTRKLEKCIRVISWLPYNLATFYIAYLTNNVHRKTSVTLG 218
FP G + H R + R R LE +I PY L +YL + V+ G
Sbjct: 93 FPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYSYLLEFTVKLHGVSQG 152
Query: 217 SKLPT*RVFGWLSSPILAYRNLSITFL 137
KL T RV + +L Y NL I L
Sbjct: 153 EKLFT-RVPQEFQNELL-YNNLVIACL 177
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 352 CGRRRVTRKLEKCIRVISWLP---YNLATFYIAYLT 254
C + LEKC++VI WL + TF + +LT
Sbjct: 514 CDSSSIDDTLEKCVKVIRWLEREGHIKTTFRVRFLT 549
>At2g22250.2 68415.m02642 aminotransferase class I and II family
protein similar to aspartate aminotransferase from
Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
SP|O33822; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 475
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 245 YVVCQIGDVKGCKIIREPGNDPYAFLEFTCH 337
++V +GD+KG K I EP Y F++F+ +
Sbjct: 374 FLVKSLGDIKGVK-ISEPQGAFYLFIDFSAY 403
>At2g22250.1 68415.m02641 aminotransferase class I and II family
protein similar to aspartate aminotransferase from
Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
SP|O33822; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 428
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 245 YVVCQIGDVKGCKIIREPGNDPYAFLEFTCH 337
++V +GD+KG K I EP Y F++F+ +
Sbjct: 327 FLVKSLGDIKGVK-ISEPQGAFYLFIDFSAY 356
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 165 ANMGDESHPKT--LYVGNLDPSVTEVFLCTLFVK 260
A+ S P T LYVG+L PSVTE L F +
Sbjct: 13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAE 46
>At1g42367.1 68414.m04881 hypothetical protein
Length = 150
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 424 NQPKTDTSNHHHIFVGDLSPEIETNILRGPSL 519
N T +S HH F L PE+E + L +L
Sbjct: 5 NHSTTRSSRRHHHFTSPLDPEVECHHLHHQTL 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,464,164
Number of Sequences: 28952
Number of extensions: 229121
Number of successful extensions: 576
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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