Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20296
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049847A Cluster: conserved hypothetical protein; ...    35   1.8  
UniRef50_Q7RLF0 Cluster: Asparagine-rich protein; n=5; Plasmodiu...    33   7.1  
UniRef50_A0C6Z6 Cluster: Chromosome undetermined scaffold_153, w...    32   9.4  

>UniRef50_UPI000049847A Cluster: conserved hypothetical protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
           hypothetical protein - Entamoeba histolytica HM-1:IMSS
          Length = 1008

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +1

Query: 163 MSTIISVWSVCLLVK*ILFVLDIVGMVINFLLYLF 267
           M TI S+  +CLLV  IL +++I+ ++   LLYLF
Sbjct: 534 MFTIFSLLIICLLVGSILLIINIIPIIERLLLYLF 568


>UniRef50_Q7RLF0 Cluster: Asparagine-rich protein; n=5; Plasmodium
           (Vinckeia)|Rep: Asparagine-rich protein - Plasmodium
           yoelii yoelii
          Length = 931

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = -2

Query: 368 KVNCYIMISNILI*MVDFNNEIHCLTMTV*L---QSTNR*SKKLITIPTMSKTNNIYFTN 198
           K N  I+  N+LI + D   +++ L  T  +   +  N  + K     ++S ++NIY+TN
Sbjct: 738 KYNDEIISENVLIPLNDIRKKLYNLLYTGYIKCHECNNNNNTKTYIKHSLSFSSNIYYTN 797

Query: 197 RQTDHTLIIVDIYMFL 150
            Q +  L IV   +F+
Sbjct: 798 NQVNENLFIVAKNIFV 813


>UniRef50_A0C6Z6 Cluster: Chromosome undetermined scaffold_153, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_153, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 2830

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -2

Query: 386  CTILGHKVNCYIMISNILI*MVDFNNEIHCLTMTV*LQSTNR*SKKLITIPTMSKTNNIY 207
            CTI   ++ C   I+NILI  ++  + I    +   +Q  N   K  IT    S  NNI 
Sbjct: 2328 CTIFNSEILCVTKITNILIATLNKESIIQIWDLQALIQQQNTNPKPTITCCIFSNNNNII 2387

Query: 206  FTN 198
              N
Sbjct: 2388 SGN 2390


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,304,121
Number of Sequences: 1657284
Number of extensions: 8808495
Number of successful extensions: 12771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12765
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)