Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20296
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   4.7  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   4.7  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   4.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.2  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
 Frame = +1

Query: 55  CEKY*LVSIENIMYSN*ILIQKNQN-FAITYMCKNM*MSTIISV----WSVCLLVK*ILF 219
           C  Y +     +  S   L+QK  N +A TY   ++ M   I+V    ++  ++   I F
Sbjct: 219 CSAYIIAHYRVLWLSLSDLLQKMGNAYARTYSTYSLFMMANITVAVYGFTSEIVDHGIRF 278

Query: 220 VLDIVGMVIN-----FLLYLFVDCNY 282
               +G++++     FLL++F DC++
Sbjct: 279 SFKEIGLLVDSTYCLFLLFVFCDCSH 304


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
 Frame = +1

Query: 55  CEKY*LVSIENIMYSN*ILIQKNQN-FAITYMCKNM*MSTIISV----WSVCLLVK*ILF 219
           C  Y +     +  S   L+QK  N +A TY   ++ M   I+V    ++  ++   I F
Sbjct: 219 CSAYIIAHYRVLWLSLSDLLQKMGNAYARTYSTYSLFMMANITVAVYGFTSEIVDHGIRF 278

Query: 220 VLDIVGMVIN-----FLLYLFVDCNY 282
               +G++++     FLL++F DC++
Sbjct: 279 SFKEIGLLVDSTYCLFLLFVFCDCSH 304


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
 Frame = +1

Query: 55  CEKY*LVSIENIMYSN*ILIQKNQN-FAITYMCKNM*MSTIISV----WSVCLLVK*ILF 219
           C  Y +     +  S   L+QK  N +A TY   ++ M   I+V    ++  ++   I F
Sbjct: 219 CSAYIIAHYRVLWLSLSDLLQKMGNAYARTYSTYSLFMMANITVAVYGFTSEIVDHGIRF 278

Query: 220 VLDIVGMVIN-----FLLYLFVDCNY 282
               +G++++     FLL++F DC++
Sbjct: 279 SFKEIGLLVDSTYCLFLLFVFCDCSH 304


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 297 SYNDSVIAINKQIEQKINYH 238
           S+N+ +   +KQI Q+  Y+
Sbjct: 118 SFNEDIAVFSKQIRQEKPYY 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,549
Number of Sequences: 336
Number of extensions: 2866
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)