Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20296
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0208 - 17941468-17941507,17942073-17942148,17943442-179435...    33   0.14 

>06_03_0208 -
           17941468-17941507,17942073-17942148,17943442-17943514,
           17944023-17944106,17945335-17945481,17945839-17945863,
           17945966-17946420
          Length = 299

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 198 ISKIDIICFRHCRYGN*FFALSVC*LQLHCH 290
           + +ID + F HC Y N F AL+VC  Q  CH
Sbjct: 235 VDEIDCLQFIHCEYLNCFLALNVCRHQGLCH 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,046,825
Number of Sequences: 37544
Number of extensions: 192730
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)