Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20296
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.78 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.78 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 441 KTVDSKINSNFLSHGEMRLYYFRSQSQLLYY 349
           K VD+K+    LS     LYY    S+ LYY
Sbjct: 246 KEVDNKVYGMALSPVTHNLYYNSPSSENLYY 276


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 280 NCNQQTDRAKN*LPYLQCLKQIIS 209
           N N+ TD+ +N L ++ C  +++S
Sbjct: 120 NANKSTDKCENGLNFIICFSKLLS 143


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 417 SNFLSHGEMRLYYFRSQSQLLYYDFKYLNLNG 322
           S  LSH E +L YF     L  Y +  +NL G
Sbjct: 199 SALLSHDEQQLSYFTQDIGLAAY-YAQVNLAG 229


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 366 SQLLYYDFKYLNL 328
           S L YY +KYLN+
Sbjct: 316 SSLPYYKYKYLNV 328


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 366 SQLLYYDFKYLNL 328
           S L YY +KYLN+
Sbjct: 316 SSLPYYKYKYLNV 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,442
Number of Sequences: 438
Number of extensions: 3144
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)