Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20293
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    28   1.3  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    27   3.9  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   3.9  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   5.2  

>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 110 TKMLRSIYKVSGTVKNISTKVKFPEKFKGTIIEKWADYWKNLFID 244
           T +    YK++ +  N +     P KF    IE W+   K+LF+D
Sbjct: 463 TTLADPCYKLAESWTNSAKNSDDPSKFSSKDIENWSAGQKSLFLD 507


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 307 WTTGIITFYLLSRNNPTECD 366
           W+ G+I F LLS N+P+  D
Sbjct: 354 WSLGVIMFLLLSGNSPSFAD 373


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 416 SLTSPTSLFIIFKLSLKSHSVGLFL 342
           S+++PT +F +  L L S+ VG+FL
Sbjct: 108 SVSNPTLMFFVGSLGLLSNFVGIFL 132


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 186 FSGNFTLVLIFLTVPDTL*ILRNIFVVFIYYEEIPNVIQHILF 58
           F+     +L F  V D   I   IF VF+++ +IP  + H+ F
Sbjct: 5   FNVGILCLLRFKNVQDNKIIFEAIFEVFLHFLKIPVYMTHLGF 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,506
Number of Sequences: 5004
Number of extensions: 79316
Number of successful extensions: 211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)