Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20293
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427...    29   5.4  
08_02_1122 + 24468086-24468276,24468726-24468976,24469092-244691...    28   7.2  
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888...    28   9.5  

>02_01_0576 -
           4270808-4270871,4271548-4271612,4271717-4271754,
           4272060-4272147,4272507-4272625,4273682-4273721
          Length = 137

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 592 LKYVGFV*VQWALYRSQELLNSEVYITDKFPSFYNE*LLDCNRCLKIASV 443
           ++Y G++ V    Y + +L N+E YI  +F     E L+ CN  L +  V
Sbjct: 79  MEYKGYL-VSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGV 127


>08_02_1122 +
           24468086-24468276,24468726-24468976,24469092-24469182,
           24469381-24469429,24469527-24469618,24469714-24469821,
           24469912-24470046,24470153-24470563,24470664-24470805,
           24470893-24470960,24471072-24471206,24471314-24471531,
           24471634-24472004
          Length = 753

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 469 YNQEVIHYRSLGIYLLCIPQN*AIPVT 549
           +N +VI Y  +G  + C+P+N ++PVT
Sbjct: 619 WNGDVIVYSHIGGEVTCLPKNASLPVT 645


>08_02_0907 -
           22485714-22486859,22487836-22487882,22488456-22488830,
           22489339-22489500,22490325-22490439
          Length = 614

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 541 PVTYTGPIVPTRNQHISVSPPVS 609
           P +Y GP  P+ + HI++ PP S
Sbjct: 390 PFSYQGPPPPSMHNHINLLPPTS 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,311,616
Number of Sequences: 37544
Number of extensions: 424587
Number of successful extensions: 905
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)