Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20293
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19727| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 31 1.4
SB_55531| Best HMM Match : Phage_integrase (HMM E-Value=0.41) 30 2.4
SB_52517| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.4
SB_50085| Best HMM Match : BRAP2 (HMM E-Value=3.3) 30 2.4
SB_30365| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.4
SB_29313| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.4
SB_55111| Best HMM Match : Phage_integrase (HMM E-Value=0.15) 30 2.4
SB_29308| Best HMM Match : Phage_integrase (HMM E-Value=0.15) 30 2.4
SB_20342| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.4
SB_3705| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.4
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 30 2.4
>SB_19727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +3
Query: 501 GNLSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVDIGFMGKWWNLFIKSTNYDVN 674
G S+M +E CDLY HC YTK + + D G +G W+ L +YDVN
Sbjct: 128 GLFSLMMQTEFGKDCDLYEQHCYYTKTRWVDLWKYVRDFGILGHWYKLETAMIDYDVN 185
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 316 GIITF-YLLSRNNPTECDFKDNLKIINNEVGLVSEECLNPKAVEHLRFLDTCYNQEVIHY 492
G++ F Y++ NNP + + D L NE+ V E NP + + + + + Q +
Sbjct: 65 GLLGFGYVVYLNNPDDDSYNDTLLDNANELLQVGERIRNPSSDVYTQEMLQLFYQGKLRR 124
Query: 493 RSLGIYLL 516
+S G++ L
Sbjct: 125 QSFGLFSL 132
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 175 FHFGAYIFNRSRHFI-NTS*HFCGLYLLRRNTKCHPTHFILFYVSTYVVL 29
F++ YI R H+ T+ +F LLR K H T I FY + Y++L
Sbjct: 158 FYYANYIILRKLHYTAQTTLYFANYILLR---KLHSTTQITFYYANYILL 204
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 292 MKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINNEVGLVSEECLNPKAVEHLRFLDTCY 471
+K ++WTT I ++ NN C+ + K + + L+ EECL P V L FL+
Sbjct: 303 VKGIEWTT--IEYF----NNAVICELIE--KNHSGILALLDEECLRPGEVSDLTFLEKLD 354
Query: 472 NQEVIH 489
Q + H
Sbjct: 355 KQWIHH 360
>SB_55531| Best HMM Match : Phage_integrase (HMM E-Value=0.41)
Length = 269
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 32 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 78
>SB_52517| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 271
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 88 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 134
>SB_50085| Best HMM Match : BRAP2 (HMM E-Value=3.3)
Length = 228
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 32 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 78
>SB_30365| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 179
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 99 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 145
>SB_29313| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 211
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 99 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 145
>SB_55111| Best HMM Match : Phage_integrase (HMM E-Value=0.15)
Length = 336
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 99 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 145
>SB_29308| Best HMM Match : Phage_integrase (HMM E-Value=0.15)
Length = 269
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 32 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 78
>SB_20342| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 331
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 191 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 237
>SB_3705| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 239
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 99 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 145
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 440 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 306
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 864 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 910
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,268,385
Number of Sequences: 59808
Number of extensions: 518588
Number of successful extensions: 1072
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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