Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20293
         (772 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011833-1|AAH11833.1|  260|Homo sapiens chromosome 19 open read...    58   5e-08
BC007244-1|AAH07244.2|  260|Homo sapiens chromosome 19 open read...    58   5e-08
BC005075-1|AAH05075.2|  260|Homo sapiens chromosome 19 open read...    58   5e-08
BC063524-1|AAH63524.1|  919|Homo sapiens RBBP6 protein protein.        30   8.0  
AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular...    30   8.0  
AL359564-1|CAB94869.1|  529|Homo sapiens hypothetical protein pr...    30   8.0  
AK026954-1|BAB15600.1|  628|Homo sapiens protein ( Homo sapiens ...    30   8.0  
AK026080-1|BAB15353.1|  863|Homo sapiens protein ( Homo sapiens ...    30   8.0  
AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation potential...    30   8.0  
AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding ...    30   8.0  
AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding ...    30   8.0  

>BC011833-1|AAH11833.1|  260|Homo sapiens chromosome 19 open reading
           frame 52 protein.
          Length = 260

 Score = 57.6 bits (133), Expect = 5e-08
 Identities = 22/59 (37%), Positives = 35/59 (59%)
 Frame = +3

Query: 498 LGNLSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVDIGFMGKWWNLFIKSTNYDVN 674
           LG  S++Y +       LY+A C Y +P +  FP R++D+GF+G+WW L     + D+N
Sbjct: 127 LGLCSLVYEAPFDAQASLYQARCRYLQPRWTDFPGRVLDVGFVGRWWVLGAWMRDCDIN 185


>BC007244-1|AAH07244.2|  260|Homo sapiens chromosome 19 open reading
           frame 52 protein.
          Length = 260

 Score = 57.6 bits (133), Expect = 5e-08
 Identities = 22/59 (37%), Positives = 35/59 (59%)
 Frame = +3

Query: 498 LGNLSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVDIGFMGKWWNLFIKSTNYDVN 674
           LG  S++Y +       LY+A C Y +P +  FP R++D+GF+G+WW L     + D+N
Sbjct: 127 LGLCSLVYEAPFDAQASLYQARCRYLQPRWTDFPGRVLDVGFVGRWWVLGAWMRDCDIN 185


>BC005075-1|AAH05075.2|  260|Homo sapiens chromosome 19 open reading
           frame 52 protein.
          Length = 260

 Score = 57.6 bits (133), Expect = 5e-08
 Identities = 22/59 (37%), Positives = 35/59 (59%)
 Frame = +3

Query: 498 LGNLSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVDIGFMGKWWNLFIKSTNYDVN 674
           LG  S++Y +       LY+A C Y +P +  FP R++D+GF+G+WW L     + D+N
Sbjct: 127 LGLCSLVYEAPFDAQASLYQARCRYLQPRWTDFPGRVLDVGFVGRWWVLGAWMRDCDIN 185


>BC063524-1|AAH63524.1|  919|Homo sapiens RBBP6 protein protein.
          Length = 919

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +2

Query: 101 IKTTKMLRSIYKVSGTVKNISTK----VKFPEK 187
           +K+T+ + S+ K +  +KN+STK    VK+PEK
Sbjct: 493 VKSTQPISSVGKPASVIKNVSTKPSNIVKYPEK 525


>AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular
            protein PACT protein.
          Length = 1625

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +2

Query: 101  IKTTKMLRSIYKVSGTVKNISTK----VKFPEK 187
            +K+T+ + S+ K +  +KN+STK    VK+PEK
Sbjct: 1166 VKSTQPISSVGKPASVIKNVSTKPSNIVKYPEK 1198


>AL359564-1|CAB94869.1|  529|Homo sapiens hypothetical protein
           protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +2

Query: 101 IKTTKMLRSIYKVSGTVKNISTK----VKFPEK 187
           +K+T+ + S+ K +  +KN+STK    VK+PEK
Sbjct: 70  VKSTQPISSVGKPASVIKNVSTKPSNIVKYPEK 102


>AK026954-1|BAB15600.1|  628|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23301 fis, clone HEP11120. ).
          Length = 628

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +2

Query: 101 IKTTKMLRSIYKVSGTVKNISTK----VKFPEK 187
           +K+T+ + S+ K +  +KN+STK    VK+PEK
Sbjct: 169 VKSTQPISSVGKPASVIKNVSTKPSNIVKYPEK 201


>AK026080-1|BAB15353.1|  863|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22427 fis, clone HRC09013. ).
          Length = 863

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 321 DASCPLHGFHWVILYITP*ILQLC 250
           DA+ P+HG +WVI Y  P    +C
Sbjct: 723 DAASPMHGHNWVIAYSRPVYFCIC 746


>AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation
            potential-related protein protein.
          Length = 1616

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +2

Query: 101  IKTTKMLRSIYKVSGTVKNISTK----VKFPEK 187
            +K+T+ + S+ K +  +KN+STK    VK+PEK
Sbjct: 1157 VKSTQPISSVGKPASVIKNVSTKPSNIVKYPEK 1189


>AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding
            protein 6 isoform 2 protein.
          Length = 1758

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +2

Query: 101  IKTTKMLRSIYKVSGTVKNISTK----VKFPEK 187
            +K+T+ + S+ K +  +KN+STK    VK+PEK
Sbjct: 1299 VKSTQPISSVGKPASVIKNVSTKPSNIVKYPEK 1331


>AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding
            protein 6 isoform 1 protein.
          Length = 1792

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +2

Query: 101  IKTTKMLRSIYKVSGTVKNISTK----VKFPEK 187
            +K+T+ + S+ K +  +KN+STK    VK+PEK
Sbjct: 1333 VKSTQPISSVGKPASVIKNVSTKPSNIVKYPEK 1365


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,745,679
Number of Sequences: 237096
Number of extensions: 2595520
Number of successful extensions: 14875
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14875
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)