Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20293
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74475-4|CAD01086.1| 185|Caenorhabditis elegans Hypothetical pr... 33 0.23
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 30 1.6
U39648-9|AAM15605.1| 186|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81453-6|CAH04639.1| 283|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81043-5|CAB02802.2| 278|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 28 6.4
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 28 6.4
Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical pr... 28 8.5
AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical ... 28 8.5
AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical ... 28 8.5
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical... 28 8.5
AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein. 28 8.5
AF045639-6|AAX22296.1| 392|Caenorhabditis elegans Serpentine re... 28 8.5
AF039716-8|AAB96738.1| 384|Caenorhabditis elegans Paf-acetylhyd... 28 8.5
AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i pr... 28 8.5
AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4 ... 28 8.5
>Z74475-4|CAD01086.1| 185|Caenorhabditis elegans Hypothetical
protein R04F11.5 protein.
Length = 185
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +1
Query: 280 QDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINNEVGLVSEECLNPKAVEHLRFL 459
+D P+KA +G+ + NPTE + D L ++ LV NP + L
Sbjct: 40 KDRPVKAGVVFSGLGFLTYAYQTNPTELEMYDYLCERRQKLVLVPNSEHNPATTKELTAR 99
Query: 460 DTCYNQEVIHYRSLGIYLLCI 522
D +Q +HY +L + L +
Sbjct: 100 DFLISQNRLHYYNLWFFSLLV 120
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 SVMYTSELSNSCDLYRAHCTYTKP-TYFSFPSRIVDIGFMGKWWNLFIKSTNYDVN 674
S++ S+ ++ +Y + + K + IVDIG +G+W + +YDVN
Sbjct: 117 SLLVASDYNDKLRIYSSQDSNLKDWPWTELWRNIVDIGALGRWHRMETAFVDYDVN 172
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 321 DASCPLHGFHWVILYITP 268
DAS P+HGF+WV Y P
Sbjct: 249 DASSPIHGFNWVASYNRP 266
>U39648-9|AAM15605.1| 186|Caenorhabditis elegans Hypothetical
protein T13C5.6 protein.
Length = 186
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 552 YRAHCTYTKPTYFSFPSRIV-DIGFMGKWWNLFIKSTNYDVNY*MEVLWFDLVLIIM*K* 728
Y+ CT+ + FP +V +G + + F + T Y + L+FDL+LI + K
Sbjct: 25 YQTACTWIEWLIHGFPWFVVATLGLIIAYGKNFSEMTQYGLVVLNLGLYFDLILIAIIKF 84
Query: 729 YVYWACPDNEYS 764
Y + P YS
Sbjct: 85 YFHRERPIKTYS 96
>Z81453-6|CAH04639.1| 283|Caenorhabditis elegans Hypothetical
protein B0250.10 protein.
Length = 283
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 219 SAHFSIIVPLNFSGNFTLVLIFLTVPDTL*ILRNIFVVFIYYEEIPNVI 73
+ HFS+++P GN VL L + + + IY +++PN +
Sbjct: 79 NVHFSLVIPAASIGNMRSVLTLLIALERVIAIYFPIFFHIYRQKLPNFV 127
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 142 RHFINTS*HFCGLYLLRRNTKCHPTHFIL 56
RH + +FC LYLLR + PT F L
Sbjct: 5 RHHLGGLLYFCALYLLRASQAQPPTFFAL 33
>Z81043-5|CAB02802.2| 278|Caenorhabditis elegans Hypothetical
protein C29F3.6 protein.
Length = 278
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3
Query: 173 SLWCLYF*PFPTLY--KYFVTFLWSLFITKKYQMSSNTFYFILCKYLCSAQFILFLI 9
S+WC F + T++ KY F++++++ + + F+ +LC+ +A ILF I
Sbjct: 108 SVWCPIF--YKTMFNLKYTKLFIFAVWLISF--LIGSLFHIVLCRIRFNADLILFTI 160
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 142 RHFINTS*HFCGLYLLRRNTKCHPTHFIL 56
RH + +FC LYLLR + PT F L
Sbjct: 5 RHHLGGLLYFCALYLLRASQAQPPTFFAL 33
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 142 RHFINTS*HFCGLYLLRRNTKCHPTHFIL 56
RH + +FC LYLLR + PT F L
Sbjct: 5 RHHLGGLLYFCALYLLRASQAQPPTFFAL 33
>Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 128 YFVTFLWSLFITKKYQMSSNTFYFILCKYLC-SAQFILFLISC 3
Y V+ + LFITK ++TF F +C +F L LI+C
Sbjct: 203 YIVSAIMGLFITKPPSEQTSTFSFGSAFKVCKKLEFDLHLIAC 245
>Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 128 YFVTFLWSLFITKKYQMSSNTFYFILCKYLC-SAQFILFLISC 3
Y V+ + LFITK ++TF F +C +F L LI+C
Sbjct: 203 YIVSAIMGLFITKPPSEQTSTFSFGSAFKVCKKLEFDLHLIAC 245
>AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical
protein Y53H1C.1b protein.
Length = 527
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 216 LITGRTYLLIIDKVARFKE*YTR*PNESHEV 308
++TG YL++ + FK+ +T PNE +++
Sbjct: 187 IVTGFWYLIVKGETEHFKDAFTPLPNEKYDI 217
>AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical
protein Y53H1C.1a protein.
Length = 541
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 216 LITGRTYLLIIDKVARFKE*YTR*PNESHEV 308
++TG YL++ + FK+ +T PNE +++
Sbjct: 187 IVTGFWYLIVKGETEHFKDAFTPLPNEKYDI 217
>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
protein Y43F8C.12 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = +2
Query: 464 PVTIKKLFIIEAWEFICYVYLRIKQFL*PIQGPLYLHETNIFQFPLPYR*YWIHGEMVEL 643
P + LF++ WEF+ L+ P LHE F +W + L
Sbjct: 290 PSVVSSLFMMFRWEFLLASTLKFVSDTMQFASPFLLHELLNF-ISAKNAPFWKGMALSIL 348
Query: 644 VYKIYKL*C*LLNGSFMV 697
++ + +L +LNG F +
Sbjct: 349 MFSVSELRSLILNGYFYI 366
>AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein.
Length = 384
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 370 KDNLKIINNEVGLVSEECLNPKAVEHLRFLDT 465
KD KI N +VG +EEC KAV+ L LD+
Sbjct: 174 KDQFKIRNEQVGKRAEEC--AKAVKILEQLDS 203
>AF045639-6|AAX22296.1| 392|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 5 protein.
Length = 392
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 158 YF*PFPTLYKYFVTFLWSLFITKKYQMSSNTFYFILCKY-LCSAQFILF 15
YF PFP + + F T + T K + S IL + + SAQF +F
Sbjct: 120 YFAPFPVIERCFATLYMHDYETNKRRWISYLLSTILYIFAITSAQFFIF 168
>AF039716-8|AAB96738.1| 384|Caenorhabditis elegans
Paf-acetylhydrolase protein 1 protein.
Length = 384
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 370 KDNLKIINNEVGLVSEECLNPKAVEHLRFLDT 465
KD KI N +VG +EEC KAV+ L LD+
Sbjct: 174 KDQFKIRNEQVGKRAEEC--AKAVKILEQLDS 203
>AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i
protein 4 protein.
Length = 194
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 244 LSTKLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKIIN-NEVGLVSEE 420
L+ + DLR +K + T G F L + T+ DF+ LK+++ NE L E+
Sbjct: 126 LTIAVNDLRGKFVKPTLKKVSKTEG--KFDKLKKKEATKVDFRAQLKVVDKNEFALDEED 183
>AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4
protein.
Length = 194
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 244 LSTKLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKIIN-NEVGLVSEE 420
L+ + DLR +K + T G F L + T+ DF+ LK+++ NE L E+
Sbjct: 126 LTIAVNDLRGKFVKPTLKKVSKTEG--KFDKLKKKEATKVDFRAQLKVVDKNEFALDEED 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,936,113
Number of Sequences: 27780
Number of extensions: 426858
Number of successful extensions: 1021
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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