Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20293
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 146 FPTLYKYFVTFLWSLFITKK 87
           FP L+  F+   W + + KK
Sbjct: 370 FPILFMLFIILYWPILLFKK 389


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 152 KNISTKVKFPEKFKGTIIEKWADYWKNLFIDYRQSC 259
           + I   V+F    KGT I+ W D   N  I + + C
Sbjct: 385 RQIYNMVRFRNLVKGTKIDNWWDNGSNQ-IAFSRGC 419


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 394 NEVGLVSEECLNPKAVEHLRFLD 462
           N     SEE +N + +E LRFL+
Sbjct: 796 NFADFYSEESINNQGLECLRFLN 818


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 552 IGHRNCLILRYT*QINSQASIMNNF 478
           I H NCL    + +IN Q +  NNF
Sbjct: 294 IQHNNCLTRIPSTRINKQHTRGNNF 318


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 277 YHSLNLATLSIINK*VLPVISPFFNN 200
           Y  L +  L + N  +LPV   FFN+
Sbjct: 90  YWDLCMLLLLVANLIILPVAISFFND 115


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 277 YHSLNLATLSIINK*VLPVISPFFNN 200
           Y  L +  L + N  +LPV   FFN+
Sbjct: 90  YWDLCMLLLLVANLIILPVAISFFND 115


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 277 YHSLNLATLSIINK*VLPVISPFFNN 200
           Y  L +  L + N  +LPV   FFN+
Sbjct: 90  YWDLCMLLLLVANLIILPVAISFFND 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,922
Number of Sequences: 438
Number of extensions: 5656
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)