Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20293
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48130.1 68418.m05945 phototropic-responsive NPH3 family prot...    29   2.6  
At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1) domain...    29   4.5  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    29   4.5  
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff...    29   4.5  
At3g42910.1 68416.m04500 expressed protein ; expression supporte...    28   5.9  
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    28   5.9  
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    28   5.9  
At5g64080.2 68418.m08048 protease inhibitor/seed storage/lipid t...    28   7.9  
At5g64080.1 68418.m08047 protease inhibitor/seed storage/lipid t...    28   7.9  
At5g13420.1 68418.m01545 transaldolase, putative similar to tran...    28   7.9  

>At5g48130.1 68418.m05945 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 625

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +3

Query: 462 HLLQSRSYSL*KLGNLSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVDIGFMGKWWN 641
           H  Q  ++   K GN  V ++ EL     L+  + +     + +  S  V +G   K W+
Sbjct: 318 HTAQPENFIYPKAGNRQVAFSQELLTMESLFSVYVSTESERHLTSSSSNVRVG---KLWD 374

Query: 642 LFIKSTNYD 668
           +F+    YD
Sbjct: 375 IFLSRLPYD 383


>At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 666

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 665 IVCRFYKQVPPFPHESNINDTGGETEI 585
           ++C F   + P PH+ ++  +GGET I
Sbjct: 66  LMCSFGGHIMPRPHDKSLTYSGGETRI 92


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 511 LLCIPQN*AIPVTYTGPIVPTRNQHISVSPPVSLILD 621
           L CI QN A+ VTY   + P ++ HIS  P  ++I D
Sbjct: 676 LPCIEQNRALNVTY---LCPAKHSHISEPPRGAIIPD 709


>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
            effector-related contains similarity to SEN1, a positive
            effector of tRNA-splicing endonuclease [Saccharomyces
            cerevisiae] gi|172574|gb|AAB63976
          Length = 1939

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +1

Query: 349  NPTECDFKDNLKIINNEVGL--VSEECLNPKAVEHLRFLDTCYNQEVIHYRSLGIYLLCI 522
            +P     + NLK   +E+G    S+E     A+ + + +D            L + L  +
Sbjct: 760  DPVSSGIRPNLKKATDELGPRGTSKEA-QKSAISNAKGMDLRKVVNETEVDPLDLALKSL 818

Query: 523  PQN*AIPVTYTGPIVPTRNQHISVSPPVSLILDSW 627
             +  ++P+  +GPIVP R Q I +  PV+   D W
Sbjct: 819  KRQ-SLPLAKSGPIVPKR-QVIQLCAPVNKKSDRW 851


>At3g42910.1 68416.m04500 expressed protein ; expression supported
           by MPSS
          Length = 649

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 447 LAIFRHLLQSRSYSL*KLGNLSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVD 614
           L   RH+LQ+      KL  + V+    +S  C LY   C    P  F F + +VD
Sbjct: 463 LKFSRHVLQTGEVDGNKL-RVDVLDAKFISQLCHLYPKFCKAHVPQDFQFTTSLVD 517


>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 156 FLTVPDTL*ILRNIFVVFIYYEEIPNVIQHILF 58
           +L  PD + +L   +++++ +EE PN +Q  LF
Sbjct: 234 YLPGPDDMLVLDISYMIYMKFEEYPNALQIALF 266


>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 340 SRNNPTECDFKDNLKIINNEVGLVSEECLNPKAVEHLR 453
           SR NP   DF+  L+ +NN V  +S + +N  +VEH++
Sbjct: 409 SRCNPGSNDFEYRLESVNN-VHRLSNQDVNNASVEHVK 445


>At5g64080.2 68418.m08048 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 178

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 422 HSSLTSPTSLFIIFKLSLKSHSV 354
           HSS T+ T LF+I  LSL S SV
Sbjct: 4   HSSFTATTPLFLIVLLSLSSVSV 26


>At5g64080.1 68418.m08047 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 182

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 422 HSSLTSPTSLFIIFKLSLKSHSV 354
           HSS T+ T LF+I  LSL S SV
Sbjct: 4   HSSFTATTPLFLIVLLSLSSVSV 26


>At5g13420.1 68418.m01545 transaldolase, putative similar to
           transaldolase [Solanum tuberosum] gi|2078350|gb|AAB54016
          Length = 438

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 152 KNISTKVKFPEKFKGTIIEKWAD----YWKNLFIDYRQSCKI*GVIYKMTQ 292
           K IST   + ++F+ T++E   D    YW+ +  D + +CK+   IY  T+
Sbjct: 120 KAISTSNAYNDQFR-TLVESGKDIESAYWELVVKDIQDACKLFEPIYDQTE 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,356,445
Number of Sequences: 28952
Number of extensions: 380373
Number of successful extensions: 836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)