SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20291
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   166   2e-42
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   166   3e-42
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...   161   1e-40
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...   144   1e-35
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...   122   4e-29
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    71   2e-13
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    48   2e-06
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    42   6e-05
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    29   0.80 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   5.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.5  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   9.9  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.9  

>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  166 bits (404), Expect = 2e-42
 Identities = 105/206 (50%), Positives = 126/206 (61%), Gaps = 14/206 (6%)
 Frame = +2

Query: 89  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARTPTT 268
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA  P  
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63

Query: 269 -----------QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HIRVKTKPF 415
                      ++  P V SD+  K    K     G   L V           + +TK F
Sbjct: 64  TIFDAKRLIGRKFDDPEVQSDM--KHWPFKVISKDGKPVLQV---------EYKGETKTF 112

Query: 416 SPRKSVPWCLRK*RKLPK-LISAKLCIMQLSRSAYFNDSQRQPTKDAGTISGLNVLRIIN 592
           +P +     L K R+  +  +  K+    ++  AYFNDSQRQ TKDAG I+GLNVLRIIN
Sbjct: 113 TPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIIN 172

Query: 593 EPTAAAIAYGLDK--KGTENEMYLSL 664
           EPTAAAIAYGLD+  +G  N +   L
Sbjct: 173 EPTAAAIAYGLDRSNQGESNVLIFDL 198



 Score =  136 bits (329), Expect = 3e-33
 Identities = 62/85 (72%), Positives = 73/85 (85%)
 Frame = +1

Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 435
           NP+NTIFDAKRLIGRKF+D  VQ+DMKHWPF+V+S  GKP ++V YKGE KTF PEE+SS
Sbjct: 60  NPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISS 119

Query: 436 MVLTKMKETAEAYLGKTVHNAVITV 510
           MVL KM+ETAEAYLG  V +AV+TV
Sbjct: 120 MVLMKMRETAEAYLGGKVTDAVVTV 144


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  166 bits (403), Expect = 3e-42
 Identities = 97/186 (52%), Positives = 122/186 (65%), Gaps = 5/186 (2%)
 Frame = +2

Query: 89  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARTPTT 268
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA  P  
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-- 61

Query: 269 QYSMPNVSSDVSSKMLLCKPT*STGLSR--LSVMEANLRSR*HIRVK--TKPFSPRKSVP 436
             ++ +    +  +     P   + +      V+E + +    +  K  TK F+P +   
Sbjct: 62  HNTIFDAKRLIGRR--FNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISS 119

Query: 437 WCLRK*RKLPK-LISAKLCIMQLSRSAYFNDSQRQPTKDAGTISGLNVLRIINEPTAAAI 613
             L K R+  +  +  K+    ++  AYFNDSQRQ TKDAG I+GLNVLRIINEPTAAAI
Sbjct: 120 MVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAI 179

Query: 614 AYGLDK 631
           AYGLD+
Sbjct: 180 AYGLDR 185



 Score =  128 bits (310), Expect = 5e-31
 Identities = 58/85 (68%), Positives = 71/85 (83%)
 Frame = +1

Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 435
           NP+NTIFDAKRLIGR+F D  VQ+DMKHWPF+V+   GKP I+V +KGE KTF PEE+SS
Sbjct: 60  NPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISS 119

Query: 436 MVLTKMKETAEAYLGKTVHNAVITV 510
           MVL KM+E+AEA+LG  V +AV+TV
Sbjct: 120 MVLLKMRESAEAFLGGKVTDAVVTV 144


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score =  161 bits (390), Expect = 1e-40
 Identities = 90/189 (47%), Positives = 119/189 (62%), Gaps = 2/189 (1%)
 Frame = +2

Query: 92  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARTP-TT 268
           +GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ    P  T
Sbjct: 38  IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97

Query: 269 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HIRVKTKPFSPRKSVPWCLR 448
            + +  +      +  + K   S     ++     L    ++  K K F+P +     L 
Sbjct: 98  IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPL-VEVNVGGKKKKFTPEEISAMILS 156

Query: 449 K*RKLPKLISAK-LCIMQLSRSAYFNDSQRQPTKDAGTISGLNVLRIINEPTAAAIAYGL 625
           K ++  +    K +    ++  AYFND+QRQ TKDAGTI+GLNV+RI+NEPTAAAIAYGL
Sbjct: 157 KMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGL 216

Query: 626 DKKGTENEM 652
           DK  TE  +
Sbjct: 217 DKTDTEKHI 225



 Score =  110 bits (264), Expect = 2e-25
 Identities = 49/85 (57%), Positives = 67/85 (78%)
 Frame = +1

Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 435
           NP NTIFD KRLIGRKF++ T+  D+K +PF +V+D  +P ++V   G+ K F PEE+S+
Sbjct: 93  NPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISA 152

Query: 436 MVLTKMKETAEAYLGKTVHNAVITV 510
           M+L+KMK+TAEAYLGK V +AV+TV
Sbjct: 153 MILSKMKQTAEAYLGKPVTHAVVTV 177


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score =  144 bits (348), Expect = 1e-35
 Identities = 89/194 (45%), Positives = 117/194 (60%), Gaps = 12/194 (6%)
 Frame = +2

Query: 89  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARTPTT 268
           A+GIDLGTTYSCV V++   VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ A  P  
Sbjct: 8   AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67

Query: 269 -----------QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HIRVKTKPF 415
                      +Y  P    D+  K    K   + G+  + V         +   + K F
Sbjct: 68  TVFDAKRLIGRRYEDPETQKDI--KHWPFKVIDNNGIPTIEV---------NYLGEKKQF 116

Query: 416 SPRKSVPWCLRK*RKLPKL-ISAKLCIMQLSRSAYFNDSQRQPTKDAGTISGLNVLRIIN 592
           + ++     L K +++ +  ++ ++    ++  AYF+DSQR  TKDAG I+GLNVLRIIN
Sbjct: 117 TAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIIN 176

Query: 593 EPTAAAIAYGLDKK 634
           EPTAAAIAYGLD K
Sbjct: 177 EPTAAAIAYGLDAK 190



 Score =  114 bits (274), Expect = 1e-26
 Identities = 52/85 (61%), Positives = 64/85 (75%)
 Frame = +1

Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 435
           NP NT+FDAKRLIGR++ED   Q D+KHWPF+V+ + G P I+V Y GE K F  +E+S+
Sbjct: 64  NPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISA 123

Query: 436 MVLTKMKETAEAYLGKTVHNAVITV 510
           MVLTKMKE +EA L K V  AVITV
Sbjct: 124 MVLTKMKEISEAKLNKRVEKAVITV 148


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score =  122 bits (295), Expect = 4e-29
 Identities = 79/193 (40%), Positives = 109/193 (56%), Gaps = 8/193 (4%)
 Frame = +2

Query: 80  KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAR 256
           K P +GIDLGTT SC+ + +    ++IAN +G RTTPS VAFT D ERL+G +AK Q   
Sbjct: 49  KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108

Query: 257 TPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*H------IRVKTKPFS 418
            P   +         ++K L+ +      + R  + E   +   H      +  + K +S
Sbjct: 109 NPENTF--------FATKRLIGRRFKEPEVQR-DIKEVPYKIVEHSNGDAWLEARGKTYS 159

Query: 419 PRKSVPWCLRK*RKLPKLISAK-LCIMQLSRSAYFNDSQRQPTKDAGTISGLNVLRIINE 595
           P +   + L K R+       K +    ++  AYFNDSQRQ TK AG I+GLNVLR++NE
Sbjct: 160 PSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNE 219

Query: 596 PTAAAIAYGLDKK 634
           PTAAA+AYGLDKK
Sbjct: 220 PTAAALAYGLDKK 232



 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 37/85 (43%), Positives = 52/85 (61%)
 Frame = +1

Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 435
           NP NT F  KRLIGR+F++  VQ D+K  P+++V            +   KT+ P ++  
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG---DAWLEARGKTYSPSQIGG 165

Query: 436 MVLTKMKETAEAYLGKTVHNAVITV 510
            +L+KM+ETA  YLGK V NAV+TV
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTV 190


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 48/188 (25%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
 Frame = +2

Query: 77  AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN-QVA 253
           ++   VGID G + + + V ++  +++I N+  NR+TPS V++ +  R +G+AAK+ + +
Sbjct: 3   SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62

Query: 254 RTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS-RLSVMEANLRSR*HIRVKTKPFSPRKS 430
               T  S+  ++        + K   S  +S +L+ ++  + ++     +   FS  + 
Sbjct: 63  NFRNTVGSLKRLAGRTYDDPEI-KDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQL 121

Query: 431 VPWCLRK*RKLPKL-ISAKLCIMQLSRSAYFNDSQRQPTKDAGTISGLNVLRIINEPTAA 607
           +     K + + +  +   +  + +S  A+F D QR+   +A  I+GLN LR++N+  AA
Sbjct: 122 IAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAA 181

Query: 608 AIAYGLDK 631
           A+ YG+ K
Sbjct: 182 ALTYGITK 189



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +1

Query: 256 NPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 432
           N  NT+   KRL GR ++D  ++  +      ++    G    KV Y  E+  F   ++ 
Sbjct: 63  NFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLI 122

Query: 433 SMVLTKMKETAEAYLGKTVHNAVITV 510
           +   TK+K  AEA L  +V + VI++
Sbjct: 123 AAYFTKIKAIAEAELIGSVSDVVISI 148


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 5/180 (2%)
 Frame = +2

Query: 92  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAR----T 259
           +GI  G   S +   + GK +++AN++GNR  PS +++   +   G  A+ Q+ R    +
Sbjct: 27  IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86

Query: 260 PTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HIRVKTKPFSPRK-SVP 436
            T    +   S D  +            +      +  ++       K K  +  + SV 
Sbjct: 87  VTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEASVR 146

Query: 437 WCLRK*RKLPKLISAKLCIMQLSRSAYFNDSQRQPTKDAGTISGLNVLRIINEPTAAAIA 616
              R        +  K+    +S   YF D+QR+  + A   +GL VL++I++P A  +A
Sbjct: 147 HLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILA 206


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 6/194 (3%)
 Frame = +2

Query: 92  VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARTPTT 268
           + ID GT ++   + + G  +EI+      R   S VAF   ER+ G  A N   R P  
Sbjct: 25  LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83

Query: 269 QYSMPNVSS--DVS--SKMLLCKPT*STGLSRLSVMEANLRSR*HIRVKTKPFSPRKSVP 436
            +S+ NV    D +    +L+ K   S    +L   E        +    + +S  + + 
Sbjct: 84  -HSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIA 142

Query: 437 WCLRK*RKL-PKLISAKLCIMQLSRSAYFNDSQRQPTKDAGTISGLNVLRIINEPTAAAI 613
             +     L  ++   K+  + L+   +FN+ QR    +A  I   +VL +I++  A AI
Sbjct: 143 MTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVAVAI 202

Query: 614 AYGLDKKGTENEMY 655
            Y L +  + +  Y
Sbjct: 203 EYSLSRSFSTDPTY 216


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 84  HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 179
           HP   S W+P    LVS+    W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 170 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 12
           G W  SP S +  H   ++++  +F +RVL   C+      L  K  +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 200 AFTDTERLIGDAAKNQVARTPTTQYSMPNVSSDV 301
           AF D  +  G  AK   A  P+T+  + N+S  V
Sbjct: 155 AFYDASQTFGSTAKVAPAPAPSTKTPLANISKPV 188


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 262 WGSRHLVLGGISDETLGVCERNIRRSGPVALVVGD-DLHLPVLEDTNARVR 113
           WGS    +G +   TLG+ + +      + L+VGD  LHL V ++ +A +R
Sbjct: 418 WGSIGWSVGAMFGATLGIKDSDAPHRRSI-LIVGDGSLHLTV-QEISATIR 466


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = -2

Query: 518 STRTVITALCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQ 339
           S  + I++  T+L     + S + +S+  + S    +LSS +     + +  SL+T    
Sbjct: 613 SISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSIST---IPISSSLSTYSSS 669

Query: 338 CFMSACTVASSN 303
              S+ T+ SS+
Sbjct: 670 VIPSSSTLVSSS 681


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 399 TLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 277
           T I  L   + S+TDN+ER  + +G  + I  +TS   F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 70  QNGKSTRSRNRSGYHVLLRWCLPARE 147
           +NGK T +R +S     + W  P++E
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,306
Number of Sequences: 5004
Number of extensions: 64919
Number of successful extensions: 226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -