Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20290
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 47 3e-06
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 37 0.004
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 37 0.004
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 34 0.027
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 29 0.58
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 29 0.77
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 27 3.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 4.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 7.2
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 9.5
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 9.5
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +2
Query: 527 ATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
A ++K +PN KR M+AFM +S R K+ PD ++ LG+ WK L ER P
Sbjct: 5 AKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREP 64
Query: 707 SSMK 718
K
Sbjct: 65 YEEK 68
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 36.7 bits (81), Expect = 0.004
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +2
Query: 566 RPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
RP NAF+++ + + + + P ++N+++SK +G +W+ + E R
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVR 149
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 36.7 bits (81), Expect = 0.004
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +2
Query: 566 RPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
RP NAF+++ + + + + P ++N+++SK +G +W+ + E R
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVR 149
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 33.9 bits (74), Expect = 0.027
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +2
Query: 530 TQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWK 679
T +K+ + +KRP+N+FM++ RR + P ++ IS+ +G++W+
Sbjct: 6 TAEQKDQKSSVKRPLNSFMLY----RRDRQAEIPTSNHQSISRIIGQLWR 51
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.58
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 255 IPKPLGGSITEDLPVSRNYPYFPFVNVKTATNFLAGVRS--KSHNFSVGSRPQFS 97
IP P+GG ED+ SRN+P N T GV S + N V + P S
Sbjct: 206 IPPPIGGP-QEDMGYSRNFPVHASSNYNTTHTSGGGVHSGAATPNAYVNNNPSSS 259
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 509 STPYTDATQTKKNN---PNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEIS 655
STP+T KKN + + R + + +W +K+ Q D HN +I+
Sbjct: 99 STPFTCIALNKKNQFATGSELTRSLASVQLWDVRSEQKLIRQWNDAHNDDIT 150
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 562 QETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSR---TRLEDSERRRAPPFIDEAERLR 732
QE DE+V+G +A+ +++ N G ++ S T + +AP F + A RL
Sbjct: 207 QEDDEKVNGNLANISKRAEPQNNGSTNASSLQSSNYLPTNPTLTHSNKAPSFEELAARLD 266
Query: 733 QL 738
+L
Sbjct: 267 RL 268
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 282 VVPATSACSIPKPLGGSITEDLPVSRNYPYF 190
++P S S+P+ L DLP RN+ YF
Sbjct: 589 IIPMPSGNSVPELLDLLPKVDLPKDRNFQYF 619
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +1
Query: 553 QPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAPPFIDEAERLR 732
Q E + A R +K+ +TN + + + + D+ERR + E E LR
Sbjct: 349 QALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRNVLSNMLDNERREKEALLQELESLR 408
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 333 LFEFQILKFICSFTAVRVVPATSACSIPKPLGGSITEDLPVSRNYPYFPFV---NVKTAT 163
+F++ ILK+ A AT+ + P+ P++ NY P N KT
Sbjct: 288 VFDWMILKYQKRAAAAAAASATAPPQVTSPMVSQTQPVNPITPNYSSIPLPAERNPKTPQ 347
Query: 162 NFLAGV 145
+F +
Sbjct: 348 SFSTNI 353
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 219 LPVSRNYPYFPFVNVKTATNFLAGVRSK--SHNFSVGSRPQFS*HCGAIESLSIELSCYL 46
+P+SRN + PFV +A G+ +K N ++G R + G L+++
Sbjct: 542 VPLSRNAEFAPFVKKLSAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFETLQ 601
Query: 45 NAATVALR 22
N T+ LR
Sbjct: 602 N-ETITLR 608
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,689
Number of Sequences: 5004
Number of extensions: 66519
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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