Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20290
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 53 2e-07
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 42 6e-04
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 33 0.27
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 33 0.35
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 33 0.35
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 31 1.4
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 28 7.6
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502 28 10.0
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
KK +PN KR M FM +S ER + PD+ EI+K LG +W+ + EE+ P
Sbjct: 592 KKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQP 647
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 563 KRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
K+P A+++W + + +I +++PD E+S LG WK L EE+ P
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQP 205
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/51 (27%), Positives = 33/51 (64%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
+PN K+P ++F+++S+ RR++ E+ P + ++ ++ + WK L + E+
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEK 460
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 563 KRPMNAFMVWSQIERRKICEQTPDMHNAE-ISKNLGRVWKTLNDEERHP 706
KRP AF ++ R++ + PD + ++K G WK+++DE++ P
Sbjct: 93 KRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKP 141
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAE-ISKNLGRVWKTLNDEER 700
+ +PN KRP +AF V+ + R+ E+ P++ I K G WK++ D R
Sbjct: 29 EKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIR 82
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 563 KRPMNAFMVWSQIERRKICEQTPDMHN-AEISKNLGRVWKTLNDEERHP 706
KRP +AF V+ R++ PD + A +SK G W+ ++++E+ P
Sbjct: 34 KRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAP 82
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 563 KRPMNAFMVWSQIERRKICEQTPDMHNA-EISKNLGRVWKTLNDEER 700
K+P AF + + R+ E+ P + + E+ K G W T+ EER
Sbjct: 50 KKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEER 96
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 649 DIKKSRTRLEDSERRRAPPFIDEAERLRQLH 741
D +K R + D R + P++DE ER + LH
Sbjct: 193 DAQKIRRNVMDCFERASLPYLDEEERKKNLH 223
>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
Length = 1385
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -2
Query: 625 LFAYFSAFYLRPDHERVHRSLDVVGVILLRLCGI------CVWGREFLSIS*DPNTGNPL 464
L Y A + P H R+ L V+ +L C + WGRE+LS+ + T NP+
Sbjct: 207 LLVYLPAVHHNPSHIRI--KLRVILCYILYQCDMEKESWHSRWGREYLSMVDEYRTSNPV 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,596,927
Number of Sequences: 37544
Number of extensions: 439346
Number of successful extensions: 1167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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