Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20290
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 6e-19
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 83 3e-16
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 4e-15
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 6e-15
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 79 6e-15
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 2e-14
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 73 4e-13
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 71 8e-13
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 3e-12
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 3e-12
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 66 3e-11
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 66 3e-11
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 2e-10
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 62 4e-10
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 62 4e-10
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 60 2e-09
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 50 2e-06
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 40 0.003
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 38 0.007
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 34 0.12
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 33 0.27
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 32 0.47
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 32 0.47
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 32 0.47
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 32 0.63
SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43) 28 1.1
SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42) 28 1.1
SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32) 28 1.1
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 31 1.4
SB_1761| Best HMM Match : ERF (HMM E-Value=6.8) 30 1.9
SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9) 30 1.9
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_26951| Best HMM Match : CUB (HMM E-Value=0) 30 2.5
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 30 2.5
SB_21574| Best HMM Match : T-box (HMM E-Value=0) 30 2.5
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 29 3.3
SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26) 29 3.3
SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041) 29 5.8
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) 28 7.7
SB_53479| Best HMM Match : Zot (HMM E-Value=1.1) 28 7.7
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_54439| Best HMM Match : SNF (HMM E-Value=0) 28 7.7
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 91.9 bits (218), Expect = 6e-19
Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 5/66 (7%)
Frame = +2
Query: 524 DATQT-----KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLN 688
DATQ KK++ H+KRPMNAFMVWSQIERRK+ E+ PDMHNAEISK LG+ WK L+
Sbjct: 28 DATQATHESKKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLS 87
Query: 689 DEERHP 706
+ E+ P
Sbjct: 88 ESEKRP 93
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 83.0 bits (196), Expect = 3e-16
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
K H+KRPMNAFMVW+Q RRK+ +Q P +HNAE+SK LG++WK LND E+ P
Sbjct: 58 KTQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLNDSEKKP 112
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 553 QPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRL----EDSERRRAPPFIDEA 720
+PH + + A ++ + H ++ K+ +L DSE++ PFI+EA
Sbjct: 61 KPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLNDSEKK---PFIEEA 117
Query: 721 ERLRQLHMRD 750
ERLR H R+
Sbjct: 118 ERLRIKHKRE 127
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 79.0 bits (186), Expect = 4e-15
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +2
Query: 536 TKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
TK N+ + +KRPMNAFMVWS+ RRK+ + P MHN+EISK LG WK L+++E+ P
Sbjct: 781 TKANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEKRP 837
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 673 LEDSERRRAPPFIDEAERLRQLHMRD 750
L + E+R P+IDEA RLR +HM++
Sbjct: 830 LSEQEKR---PYIDEARRLRAVHMKE 852
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 78.6 bits (185), Expect = 6e-15
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +2
Query: 557 HIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
H+KRPMNAFMVWS+ ERRKI ++ P MHN+EISK LG WK L D+++ P
Sbjct: 326 HVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKP 375
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 78.6 bits (185), Expect = 6e-15
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +2
Query: 557 HIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
H+KRPMNAFMVWS+ ERRKI ++ P MHN+EISK LG WK L D+++ P
Sbjct: 9 HVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKP 58
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 76.6 bits (180), Expect = 2e-14
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = +2
Query: 527 ATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
A K + IKRPMNAFMVW+Q+ERR++ + P++HNAE+SK LG W+ LN ++ P
Sbjct: 355 ARTEKDDETERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRALNSTQKRP 414
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 703 PFIDEAERLRQLHMRD 750
PF+DEAERLR HM+D
Sbjct: 414 PFVDEAERLRLQHMQD 429
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 75.4 bits (177), Expect = 5e-14
Identities = 33/64 (51%), Positives = 47/64 (73%)
Frame = +2
Query: 515 PYTDATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDE 694
PY++ Q K +P +KRPMN+FMVW+Q RRK+ EQ P +HNAE+SK LG++W+ L+
Sbjct: 98 PYSEV-QLPKKDPK-VKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRMLSAA 155
Query: 695 ERHP 706
E+ P
Sbjct: 156 EKQP 159
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 72.5 bits (170), Expect = 4e-13
Identities = 26/55 (47%), Positives = 41/55 (74%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+ + +H+KRPMN+FM+W+++ RRK E+ P +HNAEISK LG+ W L +++ P
Sbjct: 88 EEDDSHVKRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRP 142
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 71.3 bits (167), Expect = 8e-13
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+ + HIKRPMNAFMVWS+ ERRK+ + P+M N EISK LG W L++EE+ P
Sbjct: 3 ETDDQHIKRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEKRP 57
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 69.7 bits (163), Expect = 3e-12
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +2
Query: 554 NHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
NH+KRPMNAFMVWS+ RR ++ P MHN+EISK LG WK + DE + P
Sbjct: 7 NHVKRPMNAFMVWSKERRRIKSQECPRMHNSEISKILGCEWKAMKDELKQP 57
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 69.7 bits (163), Expect = 3e-12
Identities = 30/51 (58%), Positives = 39/51 (76%)
Frame = +2
Query: 554 NHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+HIKRPMNA+MVWS+ ERR+I E+ P M N+EISK LG W +L +E+ P
Sbjct: 6 DHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSLTLDEKQP 56
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = +1
Query: 703 PFIDEAERLRQLHMRD 750
P+++EA+RLR+LH +D
Sbjct: 56 PYVEEAKRLRELHKKD 71
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 66.1 bits (154), Expect = 3e-11
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2
Query: 554 NHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
+HIKRPMNAFM+WS +RR++ + P +HN++ISK LG W+ L EE+
Sbjct: 5 SHIKRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEK 53
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 66.1 bits (154), Expect = 3e-11
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2
Query: 554 NHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
+HIKRPMNAFM+WS +RR++ + P +HN++ISK LG W+ L EE+
Sbjct: 5 SHIKRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEK 53
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = +2
Query: 557 HIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
H+KRPMN FMVWS+ +R +I ++ P ++NA +SK LG WK L+ EE+ P
Sbjct: 7 HVKRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKLSVEEKEP 56
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 63.7 bits (148), Expect = 2e-10
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +2
Query: 518 YTDATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEE 697
+T + ++ N +KRPMNAFM+W+++ R I ++ P +NAEIS LG +W L+ E+
Sbjct: 87 HTVQAEMRQENNAKVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQ 146
Query: 698 RHP 706
+ P
Sbjct: 147 QKP 149
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 62.5 bits (145), Expect = 4e-10
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +2
Query: 527 ATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
A K++ IKRP+NAF++WS+ RR I + P MHN +IS+ LG W+ L +EE+
Sbjct: 8 AADDLKSSSEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEEEK 65
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 62.5 bits (145), Expect = 4e-10
Identities = 28/60 (46%), Positives = 36/60 (60%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMKP 721
K H+K PMNAFMV S+ +R+ P MHN+E SK+LG WK L EE+ P +P
Sbjct: 3 KQEDGHVKSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKMLTSEEKDPFIAEP 62
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 60.5 bits (140), Expect = 2e-09
Identities = 24/51 (47%), Positives = 37/51 (72%)
Frame = +2
Query: 554 NHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+H+KRP+N+FMVW++ +RR + + P M NAEISK LG W+ + + E+ P
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPESEKLP 58
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
KK +PN KR M+A+M+W R++I ++ P + E+SK G +WK L D+ +
Sbjct: 535 KKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSK 588
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 49.2 bits (112), Expect = 4e-06
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +2
Query: 545 NNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
++ +HI+RPMNAFM++S+ R + ++ P N +SK LG W L EE+
Sbjct: 511 DSKDHIRRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYALGPEEK 562
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +2
Query: 521 TDATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPD----MHNAEISKNLGRVWKTLN 688
+ A Q K+ +PN K+P NAF ++ Q +R + E D M + E++K+L + W L
Sbjct: 42 SSAKQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNLL 101
Query: 689 DEER 700
+E+
Sbjct: 102 PDEK 105
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDE 694
KN +++ P++AF +W+ R+ + PD+ ++ K L R WK ++++
Sbjct: 221 KNKYPNVEPPLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEK 271
>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 1311
Score = 34.3 bits (75), Expect = 0.12
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIER 607
+ + +H+KRPMN+FM+W+++ R
Sbjct: 1289 EEDDSHVKRPMNSFMIWAKVMR 1310
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 551 PNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTL 685
P KRP AF + Q K+ E+ P + +AEI K+L W L
Sbjct: 303 PKKHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANL 347
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +2
Query: 551 PNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
P ++P+ +M +S+ ++ Q PD +I K +G++W+ L+D E+
Sbjct: 25 PKPPEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDDAEK 74
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 575 NAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
N F +W + R +I E+ PD+ + ++ K + WK L+ E+
Sbjct: 41 NGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEK 82
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 88 AVLTELRSGPNAKIMTFGSYACEEVSSSFHVHEGKVRIVSRYWEIFGN 231
AVL + + G +++ +GS + + ++H+H GK+ I++ W I N
Sbjct: 452 AVLYQRQKG-TLRVIGYGSRSLTQAERNYHLHSGKLEILALKWAIREN 498
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 88 AVLTELRSGPNAKIMTFGSYACEEVSSSFHVHEGKVRIVSRYWEI 222
AVL + + G +++ +GS + + ++H+H GK+ ++ W I
Sbjct: 516 AVLYQRQKG-TLRVIGYGSRSLTQAERNYHLHSGKLEFLALKWAI 559
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 575 NAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
N F +W + R +I E+ PD+ + ++ K + WK L+ E+
Sbjct: 334 NGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEK 375
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 533 QTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
+ K +PN K +A+ + Q +R K+ + A+ SK WK +++EE+
Sbjct: 3 KVSKKDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEK 58
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = +2
Query: 566 RPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
+P++A+ ++ + + I Q P EI+K +G++W+ L +E++
Sbjct: 927 KPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQK 971
>SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)
Length = 521
Score = 28.3 bits (60), Expect(2) = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 351 HFSTSDLFEFQILKFICSFTAVRVVP 274
+F+ D F FQ KF+C FT R +P
Sbjct: 162 YFAGGDKFIFQPAKFLCFFTLKRPLP 187
Score = 21.4 bits (43), Expect(2) = 1.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 465 WMLASKTSHPTLAG 424
WMLAS +S P AG
Sbjct: 152 WMLASVSSVPYFAG 165
>SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)
Length = 331
Score = 28.3 bits (60), Expect(2) = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 351 HFSTSDLFEFQILKFICSFTAVRVVP 274
+F+ D F FQ KF+C FT R +P
Sbjct: 162 YFAGGDKFIFQPAKFLCFFTLKRPLP 187
Score = 21.4 bits (43), Expect(2) = 1.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 465 WMLASKTSHPTLAG 424
WMLAS +S P AG
Sbjct: 152 WMLASVSSVPYFAG 165
>SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)
Length = 271
Score = 28.3 bits (60), Expect(2) = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 351 HFSTSDLFEFQILKFICSFTAVRVVP 274
+F+ D F FQ KF+C FT R +P
Sbjct: 162 YFAGGDKFIFQPAKFLCFFTLKRPLP 187
Score = 21.4 bits (43), Expect(2) = 1.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 465 WMLASKTSHPTLAG 424
WMLAS +S P AG
Sbjct: 152 WMLASVSSVPYFAG 165
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +2
Query: 560 IKRPMNAFMVWSQIERRKICEQ-----TPDMHNAEISKNLGRVWKTLNDEERHPSSMKPN 724
+KR +A++ ++ R K+ + TP E++K G WK LNDE++ P K
Sbjct: 496 VKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPYVAKAE 555
Query: 725 A 727
A
Sbjct: 556 A 556
>SB_1761| Best HMM Match : ERF (HMM E-Value=6.8)
Length = 299
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 88 AVLTELRSGPNAKIMTFGSYACEEVSSSFHVHEGKVRIVSRYWEI 222
AVL + + G +++ +GS + + ++H+H GK+ ++ W I
Sbjct: 193 AVLYQRQKG-TLRVIGYGSRSLTQAERNYHLHSGKLEFLALKWAI 236
>SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9)
Length = 348
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 88 AVLTELRSGPNAKIMTFGSYACEEVSSSFHVHEGKVRIVSRYWEI 222
AVL + + G +++ +GS + + ++H+H GK+ ++ W I
Sbjct: 206 AVLYQRQKG-TLRVIGYGSRSLTQAERNYHLHSGKLEFLALKWAI 249
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 88 AVLTELRSGPNAKIMTFGSYACEEVSSSFHVHEGKVRIVSRYWEI 222
AVL + + G +++ +GS + + ++H+H GK+ ++ W I
Sbjct: 851 AVLYQRQKG-TLRVIGYGSRSLTQAERNYHLHSGKLEFLALKWAI 894
>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
Length = 794
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 309 FICSFTAVRVVPATSAC-SIPKP 244
F +FTAVR P + AC SIPKP
Sbjct: 432 FAATFTAVRAAPKSYACPSIPKP 454
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 554 NHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTL 685
N K P+ ++ + R K+ + PD+ E+++ LG +W L
Sbjct: 175 NAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQL 218
>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
Length = 473
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 252 PKPLGGSITEDLPVSRNYPYF 190
P+ LGG I +D+P + N PYF
Sbjct: 449 PQLLGGEIFDDIPYTANLPYF 469
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 550 PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
P H+E D R H R + + R + RRD+ + + DS R R+P
Sbjct: 1093 PSKHREWDARTHS----RERSSEREHHNGKSRRDLLEKKGSSRDSSRDRSP 1139
>SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26)
Length = 1058
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 261 CSIPKPLGGSITEDLPVSRNYPYFPFVNVKTATNFLAGVRSKSHNFSVGS 112
CS+P+P GG+ + P S+++P F +VK+ N N+ +GS
Sbjct: 929 CSLPQPTGGADVREYP-SKSHPVF---DVKSFQNMYLYSNITDSNYILGS 974
>SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)
Length = 169
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 563 KRPMNAFMVWSQIERRKICEQTPDMHNAE 649
KRPMNAFM++++ R +I + P N++
Sbjct: 32 KRPMNAFMLFAKRYRLEITQAHPGKDNSQ 60
>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
Length = 242
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +1
Query: 520 HRCHTDEEE*PQ-----PHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDS 684
H HTD P PH +T + HG D TQ T GH D +RTR +
Sbjct: 79 HGPHTDPTRTPHGHDTDPHTDTTQTPHGHDTDPTQ----TQHGH----DTDPTRTRHRPT 130
Query: 685 ERRRAP 702
RR P
Sbjct: 131 RRRHEP 136
>SB_53479| Best HMM Match : Zot (HMM E-Value=1.1)
Length = 251
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 557 HIKRPMNAFMVWSQIERRKICE 622
HIK+P+NAFM++ + R K+ +
Sbjct: 227 HIKKPLNAFMLYMKDMRPKVAQ 248
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 220 IFGNTAAERLRYGTSRGCWNHSDCCKTTNKL*NLE 324
+F + AA R G CWN C+ T +L N+E
Sbjct: 59 VFVDKAARRAILGLGVKCWNWKRKCEWTGELSNIE 93
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 28.3 bits (60), Expect = 7.7
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +1
Query: 124 KIMTFGSYACEEVSSSFHVHEGKVRIVSRYWEI 222
+++ +GS + + ++H+H GK+ ++ W I
Sbjct: 5 RVIGYGSRSLTQAERNYHLHSGKLEFLALKWAI 37
>SB_54439| Best HMM Match : SNF (HMM E-Value=0)
Length = 701
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 564 LMWLGLFFFVCVASVYGVENFYR 496
L+W+ LF + + VYG E FY+
Sbjct: 310 LLWISLFESIGIGWVYGAERFYQ 332
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,941,851
Number of Sequences: 59808
Number of extensions: 518727
Number of successful extensions: 1441
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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