Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20290
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 108 4e-24
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 79 5e-15
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 79 5e-15
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 79 5e-15
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 79 5e-15
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 79 5e-15
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 79 5e-15
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 75 6e-14
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 48 1e-05
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 48 1e-05
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 48 1e-05
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 44 2e-04
U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 42 4e-04
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 40 0.002
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 40 0.002
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 40 0.002
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 40 0.002
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 40 0.002
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 40 0.002
U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 38 0.011
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 35 0.059
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 35 0.059
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 34 0.10
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 34 0.10
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 33 0.24
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 5.1
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 5.1
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 5.1
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 5.1
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 29 5.1
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 29 5.1
AC006804-4|ABO16464.1| 369|Caenorhabditis elegans Hypothetical ... 29 5.1
AC006804-3|AAF60757.2| 388|Caenorhabditis elegans Hypothetical ... 29 5.1
U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical pr... 28 6.8
U88175-3|AAB42280.1| 295|Caenorhabditis elegans Hypothetical pr... 28 9.0
U61957-4|AAM81129.1| 558|Caenorhabditis elegans Suppressor of c... 28 9.0
AF026215-5|AAB71321.2| 509|Caenorhabditis elegans Hypothetical ... 28 9.0
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 108 bits (260), Expect = 4e-24
Identities = 49/68 (72%), Positives = 56/68 (82%)
Frame = +2
Query: 503 KFSTPYTDATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKT 682
K TPY+DAT KK++ NHIKRPMNAFMVWSQ+ERRKICE PDMHNAEISK LG W++
Sbjct: 75 KSVTPYSDATNCKKSS-NHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRS 133
Query: 683 LNDEERHP 706
L DEE+ P
Sbjct: 134 LTDEEKAP 141
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 78.6 bits (185), Expect = 5e-15
Identities = 31/55 (56%), Positives = 44/55 (80%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+N+ +H+KRPMNAFMVWS+ +RRK+ + P MHN+EISK LG WK L+++E+ P
Sbjct: 42 QNSLDHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRP 96
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1
Query: 670 RLEDSERRRAPPFIDEAERLRQLHMRD 750
+L + E+R PFIDEA+RLR LHM++
Sbjct: 88 QLSEQEKR---PFIDEAKRLRALHMKE 111
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+PNHIKRPMNAFMVW++ ERRKI + PDMHN+ ISK LG WK +++ E+ P
Sbjct: 174 SPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQP 226
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+PNHIKRPMNAFMVW++ ERRKI + PDMHN+ ISK LG WK +++ E+ P
Sbjct: 171 SPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQP 223
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+PNHIKRPMNAFMVW++ ERRKI + PDMHN+ ISK LG WK +++ E+ P
Sbjct: 277 SPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQP 329
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+PNHIKRPMNAFMVW++ ERRKI + PDMHN+ ISK LG WK +++ E+ P
Sbjct: 325 SPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQP 377
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
+PNHIKRPMNAFMVW++ ERRKI + PDMHN+ ISK LG WK +++ E+ P
Sbjct: 325 SPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQP 377
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 74.9 bits (176), Expect = 6e-14
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
K N + +KRPMNAFMVWS+ +R+K+ + P MHN+EISK LG WK L+++E+ P
Sbjct: 54 KKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRP 108
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 673 LEDSERRRAPPFIDEAERLRQLHMRD 750
L + E+R PFIDEA+RLR +HM++
Sbjct: 101 LSEQEKR---PFIDEAKRLRAIHMKE 123
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
N H++RPMNAFM++S+ R + +Q P+ N +SK LG W +L +++
Sbjct: 839 NEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQK 889
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
N H++RPMNAFM++S+ R + +Q P+ N +SK LG W +L +++
Sbjct: 839 NEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQK 889
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
N H++RPMNAFM++S+ R + +Q P+ N +SK LG W +L +++
Sbjct: 74 NEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQK 124
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQ--TPDMHNAEISKNLGRVWKTLNDEER 700
K +H+K+P+NAFM + + R+ + E+ + +AE++K LG+ W L+ EE+
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQ 239
>U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical
protein C12D12.5 protein.
Length = 241
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 17/77 (22%)
Frame = +2
Query: 527 ATQTKKNNPNHIKRPMNAFMV-----------------WSQIERRKICEQTPDMHNAEIS 655
A+Q + IKRPMNAFMV WSQ R++I HN++IS
Sbjct: 74 ASQPRTAREPRIKRPMNAFMVINVQTWKIRKSNDYIKVWSQQRRQQIAATGQKFHNSDIS 133
Query: 656 KNLGRVWKTLNDEERHP 706
K LG W+ + + E+ P
Sbjct: 134 KMLGAEWRKMEEHEKVP 150
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRK-ICEQ--TPDMHNAEISKNLGRVWKTLNDEER 700
K +H+K+P+NAF VW E RK + E+ + +AE++K LG+ W L+ EE+
Sbjct: 185 KAKKDDHVKKPLNAF-VWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQ 240
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMKP 721
K +P+ KR ++AF +SQ +R +I PD ++++ LG++WK + E + K
Sbjct: 128 KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKA 187
Query: 722 NA 727
A
Sbjct: 188 QA 189
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMKP 721
K +P+ KR ++AF +SQ +R +I PD ++++ LG++WK + E + K
Sbjct: 127 KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKA 186
Query: 722 NA 727
A
Sbjct: 187 QA 188
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMKP 721
K +P+ KR ++AF +SQ +R +I PD ++++ LG++WK + E + K
Sbjct: 129 KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKA 188
Query: 722 NA 727
A
Sbjct: 189 QA 190
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
K +PN KR M+AF W Q R +I + P M A+++K G W L D+ R
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERI--KKPGMGVADVAKAAGVEWGKLTDKSR 72
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +2
Query: 542 KNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMKP 721
K +P+ KR ++AF +SQ +R +I PD ++++ LG++WK + E + K
Sbjct: 129 KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKA 188
Query: 722 NA 727
A
Sbjct: 189 QA 190
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
K +PN KR M+AF W Q R +I + P M A+++K G W L D+ R
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERI--KKPGMGVADVAKAAGVEWGKLTDKSR 72
>U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform b protein.
Length = 199
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 635 MHNAEISKNLGRVWKTLNDEERHP 706
MHN+EISK LG WK L+++E+ P
Sbjct: 1 MHNSEISKRLGTEWKMLSEQEKRP 24
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 673 LEDSERRRAPPFIDEAERLRQLHMRD 750
L + E+R PFIDEA+RLR +HM++
Sbjct: 17 LSEQEKR---PFIDEAKRLRAIHMKE 39
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
K +PN KR +A+M W R ++ E + A+++K G WKT++ +++
Sbjct: 549 KDKDPNAPKRATSAYMQWFLASRNELKEDGDSV--ADVAKKGGAKWKTMSSDDK 600
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 35.1 bits (77), Expect = 0.059
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +2
Query: 485 VSAYR*KFSTPYTDATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNL 664
+S++R +TP + P +RP+ +M +S+ K+ + P+ +I K +
Sbjct: 1 MSSFRHPQATPARNFQDMSSRGPKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMI 60
Query: 665 GRVWKTLNDEER 700
G+ W L D E+
Sbjct: 61 GKYWLDLPDGEK 72
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 575 NAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMK 718
+ ++++S R++I + PD E+SK +G WK L++E++ M+
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMR 1501
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 575 NAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMK 718
+ ++++S R++I + PD E+SK +G WK L++E++ M+
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMR 1501
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 575 NAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMK 718
+ ++++S R++I + PD E+SK +G WK L++E++ M+
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMR 131
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
K +PN KR A+++W R + E + +++K G WK+++ +++
Sbjct: 554 KTKDPNEPKRATTAYIIWFNANRNSMKEDGDTL--GDVAKKAGAKWKSMSADDK 605
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1412 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1468
Query: 703 PF 708
F
Sbjct: 1469 DF 1470
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1424 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1480
Query: 703 PF 708
F
Sbjct: 1481 DF 1482
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1311 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1367
Query: 703 PF 708
F
Sbjct: 1368 DF 1369
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1393 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1449
Query: 703 PF 708
F
Sbjct: 1450 DF 1451
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1412 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1468
Query: 703 PF 708
F
Sbjct: 1469 DF 1470
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1424 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1480
Query: 703 PF 708
F
Sbjct: 1481 DF 1482
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1311 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1367
Query: 703 PF 708
F
Sbjct: 1368 DF 1369
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1393 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1449
Query: 703 PF 708
F
Sbjct: 1450 DF 1451
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1424 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1480
Query: 703 PF 708
F
Sbjct: 1481 DF 1482
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1424 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1480
Query: 703 PF 708
F
Sbjct: 1481 DF 1482
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 523 RCHTDEEE*PQPHQETDERVHGLVADRTQKNMRTNTGHAQRRDIKKSRTRLEDSERRRAP 702
R + EE + +E +ER DR + R + +RR+ ++ R R E+ +RR+ P
Sbjct: 1424 RARREAEEAERRRREEEERRRREAEDRKR---RQDEEDRRRREEEERRRREEEEKRRKKP 1480
Query: 703 PF 708
F
Sbjct: 1481 DF 1482
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 610 KNMRTNTGHAQRRDIKKSRTRLEDSERRRAPPFIDEAERLR 732
K R+ + RD ++ R R ERRR+PP ++R R
Sbjct: 158 KRSRSRSRERSYRDDRRDRKRSRSRERRRSPPRGTTSDRRR 198
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 610 KNMRTNTGHAQRRDIKKSRTRLEDSERRRAPPFIDEAERLR 732
K R+ + RD ++ R R ERRR+PP ++R R
Sbjct: 284 KRSRSRSRERSYRDDRRDRKRSRSRERRRSPPRGTTSDRRR 324
>AC006804-4|ABO16464.1| 369|Caenorhabditis elegans Hypothetical
protein Y53G8B.4b protein.
Length = 369
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 696 SSSFRVFQTRPRFFDISALCMSGVCSHIFLRSICDQTMNAFIGLLMWLGLFFFVCVASVY 517
++ F V PR+ + L VCS I S+ +T+ WL F+ VA
Sbjct: 189 ATGFIVVYVAPRYGHSNILVYISVCSLIGSLSVLSETLAGNQQFTNWLTYFWLASVAMCV 248
Query: 516 GVENFY 499
V+ Y
Sbjct: 249 SVQLIY 254
>AC006804-3|AAF60757.2| 388|Caenorhabditis elegans Hypothetical
protein Y53G8B.4 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 696 SSSFRVFQTRPRFFDISALCMSGVCSHIFLRSICDQTMNAFIGLLMWLGLFFFVCVASVY 517
++ F V PR+ + L VCS I S+ +T+ WL F+ VA
Sbjct: 208 ATGFIVVYVAPRYGHSNILVYISVCSLIGSLSVLSETLAGNQQFTNWLTYFWLASVAMCV 267
Query: 516 GVENFY 499
V+ Y
Sbjct: 268 SVQLIY 273
>U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical
protein ZC8.1 protein.
Length = 374
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 165 TNFLAGVRSKSHNFSVGSRPQFS*HCGAIESLSIELSCYLNAATVALRGDGEP 7
T +AG R HNF+V Q C A + + +L A++VA+ GEP
Sbjct: 82 TGLIAGDRKSVHNFNVNGTKQLIKQCKA-----LGVKRFLYASSVAVSFIGEP 129
>U88175-3|AAB42280.1| 295|Caenorhabditis elegans Hypothetical
protein F21F3.3 protein.
Length = 295
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 357 LYHFSTSDLFEFQILKFICSFTAVRVVPATS 265
++H ++ D+F I FI SFT + V + +
Sbjct: 16 VFHLTSDDVFRTAIFAFIASFTVIAAVASVT 46
>U61957-4|AAM81129.1| 558|Caenorhabditis elegans Suppressor of clr
protein 2, isoformb protein.
Length = 558
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 607 QKNMRTNTGHAQRRDIKKSRTRLEDSERRR 696
QKNMR N GHA+ +D+ K + ++++ +R
Sbjct: 48 QKNMRNNKGHAE-KDLLKEFHKCKEAQDQR 76
>AF026215-5|AAB71321.2| 509|Caenorhabditis elegans Hypothetical
protein F09G2.3 protein.
Length = 509
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 618 HIFLRSICDQTMNAFIGLLMWLGLFFFVCV 529
++F+ + +T N LMWL +F+F C+
Sbjct: 182 YLFVDHVILRTSNPVANGLMWLPIFYFACL 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,289,127
Number of Sequences: 27780
Number of extensions: 377652
Number of successful extensions: 1141
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -