Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20290
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    26   0.36 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 87  GAIESLSIEL-SCYLNAATVALRGDGE 10
           GA+ +LS++L SC +N +T+   GD E
Sbjct: 181 GALVTLSVQLLSCEVNGSTLVYIGDNE 207


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 452 QRPHIRHLLGHHFRLSKIKSPTKKNL 375
           Q+ H RH+L  +FR  K  S   K L
Sbjct: 4   QKEHYRHILLFYFRKGKNASQAHKKL 29


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 577 VHRSLDVVGVILLRLCGICVWGREFLSIS*DPNTGNPLDVGVKD 446
           +H    V GVI  R+   C++G      S    TG P  + V +
Sbjct: 514 IHSGEVVTGVIGHRMPRYCLFGNTVNLTSRTETTGEPGKINVSE 557


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 577 VHRSLDVVGVILLRLCGICVWGREFLSIS*DPNTGNPLDVGVKD 446
           +H    V GVI  R+   C++G      S    TG P  + V +
Sbjct: 514 IHSGEVVTGVIGHRMPRYCLFGNTVNLTSRTETTGEPGKINVSE 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,739
Number of Sequences: 438
Number of extensions: 4556
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)