Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20290
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 50 2e-06
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 39 0.003
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 39 0.004
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 38 0.008
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 38 0.008
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 37 0.018
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 36 0.042
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 30 2.1
At4g02160.1 68417.m00288 hypothetical protein 28 6.3
At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit, c... 28 6.3
At1g44010.1 68414.m05077 hypothetical protein 28 6.3
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro... 28 6.3
At5g65510.1 68418.m08241 ovule development protein, putative sim... 28 8.3
At1g63400.1 68414.m07170 pentatricopeptide (PPR) repeat-containi... 28 8.3
At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containi... 28 8.3
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 28 8.3
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 527 ATQTKKN---NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEE 697
AT+ KKN +PN K+P +++ ++S+ ER+K+ E+ P +NA ++ + WK L++EE
Sbjct: 365 ATKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEE 424
Query: 698 R 700
+
Sbjct: 425 K 425
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +2
Query: 527 ATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
A + KK + KRP +++++W + + ++ ++ P+ E S LG WK+L+ E++ P
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKP 186
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHP 706
K+ +P K P++AF+V++ R + E+ + E++K G WK L+D+++ P
Sbjct: 248 KEKDPLKPKHPVSAFLVYANERRAALREENKSV--VEVAKITGEEWKNLSDKKKAP 301
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERHPSSMK 718
KK + KRP +++W + ++ +Q P+ E S LG WK ++ EE+ P K
Sbjct: 122 KKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEK 181
Query: 719 PNA 727
A
Sbjct: 182 YQA 184
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +2
Query: 527 ATQTKKN---NPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEE 697
A KKN +PN K+P +++ ++ + R+ + E+ P ++N+ ++ ++ W L +EE
Sbjct: 358 AKNKKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEE 417
Query: 698 RHPSSMK 718
+ + K
Sbjct: 418 KQVYNSK 424
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 527 ATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHN-AEISKNLGRVWKTLNDEERH 703
A + K +PN KRP +AF V+ + R++ P+ + A + K G WK + DE++
Sbjct: 24 AGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKA 83
Query: 704 P 706
P
Sbjct: 84 P 84
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 539 KKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNA-EISKNLGRVWKTLNDEERHP 706
K +PN K+P + F V+ R++ PD + + + G+ WKT+ +EER P
Sbjct: 27 KTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAP 83
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHN-AEISKNLGRVWKTLNDEERHP 706
+PN KRP +AF V+ + R ++ P + A + K G WK+L+D E+ P
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAP 87
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 548 NPNHIKRPMNAFMVWSQIERRKICEQTPDMHN-AEISKNLGRVWKTLNDEERHP 706
+PN KRP +AF V+ + R E+ P + A + K G WK+L+D E+ P
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAP 84
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 35.5 bits (78), Expect = 0.042
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 476 RVRVSAYR*KFSTPYTDATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNA-EI 652
R+R+ R ++P + + P K+P AF + R++ E+ PD+ + EI
Sbjct: 38 RLRLQPLRKPKTSPKKKPVKLQTKMP---KKPATAFFFFLDDFRKQYQEENPDVKSMREI 94
Query: 653 SKNLGRVWKTLNDEER 700
K G WKT+ EE+
Sbjct: 95 GKTCGEKWKTMTYEEK 110
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 521 TDATQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRV----WKTLN 688
T+ + + N KRP+ AF ++ R+ + HN ++K+ ++ WK+L
Sbjct: 102 TNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSE----HNGSLAKDAAKIGGEKWKSLT 157
Query: 689 DEER 700
+EE+
Sbjct: 158 EEEK 161
>At4g02160.1 68417.m00288 hypothetical protein
Length = 183
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 288 VRVVPATSACSIPKPLGGSITEDLPVSRNYPYFPFVNVKTATN 160
V V+P++S +I P +T+++P S + V V TAT+
Sbjct: 65 VTVLPSSSNITILPPSSSPVTDEVPASSDDQVSEMVEVLTATS 107
>At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit,
component I-2 (ASA2) identical to SP|P32069
Length = 621
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 360 HLYHFSTSDLFEFQILKFICSFTAVR-VVPATSACSIPKPLGGSITEDLPVSRNYPY 193
H+ H S++ + E +L + S+ A+R V+P + PK + ++L V+R PY
Sbjct: 465 HVMHISSTVVGE--LLDHLTSWDALRAVLPVGTVSGAPKVKAMELIDELEVTRRGPY 519
>At1g44010.1 68414.m05077 hypothetical protein
Length = 227
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -3
Query: 357 LYHFSTSDLFEFQILKFIC----SFTAVRVVPATSACS 256
+YH S+S L++ ++C +FT +R VPA CS
Sbjct: 141 MYHSSSSSLYDNTQYFWLCMAFLAFTCIRYVPARLICS 178
>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to SP|O15347|HMG4_HUMAN High
mobility group protein 4 (HMG-4) (High mobility group
protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 448
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +2
Query: 530 TQTKKNNPNHIKRPMNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEER 700
++ K+ +P+H K + + + + ++ P + +IS+ +G +W LN++E+
Sbjct: 253 SEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGK-DRDISRMIGELWNKLNEDEK 308
>At5g65510.1 68418.m08241 ovule development protein, putative
similar to AINTEGUMENTA (GI:1209099) [Arabidopsis
thaliana]
Length = 437
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 240 GGSITEDLPVSRNYPYFPFVNVKTATNFLAGVRSKSHNFSVGS 112
G + T + PVS +N T F+A +R KS FS G+
Sbjct: 228 GSTATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGA 270
>At1g63400.1 68414.m07170 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR-repeats Pfam profile:
PF01535
Length = 577
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 535 LCGICVWGREFLSIS*D 485
LCG+C WGR F S S D
Sbjct: 36 LCGMCYWGRAFSSGSGD 52
>At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 634
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 535 LCGICVWGREFLSIS*D 485
LCG+C WGR F S S D
Sbjct: 36 LCGMCYWGRAFSSGSGD 52
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary 28614
Length = 1457
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = -3
Query: 324 FQILKFICSFTAVRVVPATSACSIPKPLGGSITEDLPVSRNYPYFPFVNVKTATNFLAGV 145
+++ + + V+ VP + + +PKP + TE LP + + FVN + T +
Sbjct: 1360 WEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQPKGFNRSRFVN-RNCTRIAHQL 1418
Query: 144 RSKSHNFSVGS 112
S VGS
Sbjct: 1419 TLISQGLKVGS 1429
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,758
Number of Sequences: 28952
Number of extensions: 354661
Number of successful extensions: 942
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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