Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20288
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    31   0.008
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.8  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   3.7  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   4.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.5  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   6.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.5  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   8.6  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   8.6  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    21   8.6  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    21   8.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 304 PVSLSSLPKLRILNVSLNKLYNLPRG-FGSFPVLEILDLTYNNLNE 438
           PV LS    L  L +  NKL N  +  FG+ P L++LDL++N+L E
Sbjct: 245 PVELS----LMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYE 286



 Score = 30.7 bits (66), Expect = 0.011
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 528 GNLKNLQILSMRENDLIEVPRELGQLARLRELHLQG 635
           GN+ +L+ L++  NDL  VP     L  LR L L+G
Sbjct: 487 GNISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEG 522



 Score = 28.7 bits (61), Expect = 0.043
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
 Frame = +1

Query: 340 LNVSLNKLYNL----------PRGFGSFPVLEILDLTYNNLNEKVLPGNFF--IMDSLRA 483
           +N+S NKL NL            G G    +++LDL++NN+    +   FF  +  SL  
Sbjct: 195 VNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITS--VAKQFFRPVELSLMQ 252

Query: 484 LYLGDN 501
           LYLG N
Sbjct: 253 LYLGHN 258



 Score = 28.3 bits (60), Expect = 0.057
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319 SLPKLRILNVSLNKLYNLP-RGFGSFPVLEILDLTYNNLN 435
           +L  L+ LN+  NK+  +    F + P LE LDL YN+++
Sbjct: 138 NLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSIS 177



 Score = 25.8 bits (54), Expect = 0.30
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 322 LPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNE 438
           L  LRI++ S N+L +LP        LE LD+++N L +
Sbjct: 319 LGNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLGK 357



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 528 GNLKNLQILSMRENDLIEV 584
           GN+ +LQ+L +  N L E+
Sbjct: 269 GNMPHLQVLDLSHNSLYEL 287



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 125 EIDLVDKGISSLEEIPGLFSLENITRLXLSHNKISVVPA 241
           E+DL    ISSL     L   + ++ L LS+N++  + A
Sbjct: 373 ELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDA 411


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -3

Query: 228 EILLWLRXRRVMFSRENKPGISSR 157
           ++ +W + RRV + +E+ P  + +
Sbjct: 160 QVKIWFQNRRVKYKKEDLPAAAGK 183


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 255 QLASAAGTTE--ILLWLRXRRVMFSRENK 175
           ++A A   TE  I +W + RR+ + +ENK
Sbjct: 274 EIAHALCLTERQIKIWFQNRRMKWKKENK 302


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 255 QLASAAGTTE--ILLWLRXRRVMFSRENK 175
           ++A A   TE  I +W + RR+ + +ENK
Sbjct: 276 EIAHALCLTERQIKIWFQNRRMKWKKENK 304


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 258 AQLASAAGTTE--ILLWLRXRRVMFSRENKPGISSRLDI 148
           ++LA   G +E  I +W + RR    ++NK  I  +  I
Sbjct: 188 SELAENLGLSERQIKIWFQNRRAKERKQNKKRIEEKSQI 226


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
          protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 17 ICLIMSHQPPVSCIPNTGKM 76
          I L + H  P++ +PN GK+
Sbjct: 8  IFLTLCHAEPIAELPNLGKV 27


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 186 RENKPGISSRLDIPLSTKSISGLFISLASSITFLAFDILPVFG 58
           R +  GI  R  I     ++  +F+ +     ++ FD+L V+G
Sbjct: 270 RASSRGIIPRAKIKTVKMTLVIVFVFVLCWSPYIVFDLLQVYG 312


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 228 EILLWLRXRRVMFSRENK 175
           +I +W + RR+ + ++NK
Sbjct: 276 QIKIWFQNRRMKWKKDNK 293


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 339 PQCFIKQTV*LAKRLWFLPC 398
           P C+I   + L    WF+ C
Sbjct: 217 PYCYINCLIYLIGGFWFMQC 236


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 228 EILLWLRXRRVMFSRENK 175
           +I +W + RR+ + ++NK
Sbjct: 276 QIKIWFQNRRMKWKKDNK 293


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
          protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 17 ICLIMSHQPPVSCIPNTGKM 76
          I L + H  P+  +PN GK+
Sbjct: 8  IFLTLCHAEPIVELPNLGKV 27


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
          protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 17 ICLIMSHQPPVSCIPNTGKM 76
          I L + H  P+  +PN GK+
Sbjct: 8  IFLTLCHAEPIVELPNLGKV 27


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
          protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 17 ICLIMSHQPPVSCIPNTGKM 76
          I L + H  P+  +PN GK+
Sbjct: 8  IFLALCHAEPIVELPNLGKV 27


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
          protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 17 ICLIMSHQPPVSCIPNTGKM 76
          I L + H  P+  +PN GK+
Sbjct: 8  IFLTLCHAEPIVELPNLGKV 27


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 551 FVDARERPD 577
           F+DA+ERPD
Sbjct: 203 FLDAKERPD 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,345
Number of Sequences: 336
Number of extensions: 2920
Number of successful extensions: 21
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)