Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20288
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    30   0.016
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +1

Query: 313 LSSLPKLRILNVSLNKLYNLPR-GFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALY 489
           L  LP L+ILN++ NK+ ++ R  F     LE + L  N L++  + G F  + SL  L 
Sbjct: 498 LWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSD--INGVFTSIASLLLLN 555

Query: 490 LGDNDFDFY 516
           L +N  +++
Sbjct: 556 LSENHIEWF 564


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 255 QLASAAGTTE--ILLWLRXRRVMFSRENK 175
           ++A A   TE  I +W + RR+ + +ENK
Sbjct: 302 EIAHALCLTERQIKIWFQNRRMKWKKENK 330


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 298 LECCYWPSLEFLSCSVG*CSRHYRDFVVA 212
           +EC   P     SC VG  ++ +RD +V+
Sbjct: 372 IECNISPRSSADSCQVGIMAQRHRDTIVS 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,975
Number of Sequences: 438
Number of extensions: 3395
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)