Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20287
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          137   7e-33
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                124   7e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             109   3e-24
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     48   1e-05
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    36   0.024
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              36   0.031
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  33   0.17 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.38 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.51 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   4.7  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  137 bits (332), Expect = 7e-33
 Identities = 60/126 (47%), Positives = 88/126 (69%)
 Frame = +1

Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDVGITIDIALWKFETSKYYVT 315
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ERD G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 316 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 495
           ++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285

Query: 496 IVGVTK 513
           ++ V K
Sbjct: 286 VILVNK 291



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/33 (45%), Positives = 25/33 (75%)
 Frame = +3

Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 605
           NKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 290 NKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  124 bits (299), Expect = 7e-29
 Identities = 56/60 (93%), Positives = 58/60 (96%)
 Frame = +1

Query: 196 MGKGSFKYAWVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 375
           MGKGSFKYAWVLDKLKAER+ GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  109 bits (261), Expect = 3e-24
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
 Frame = +1

Query: 268 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 447
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 448 TREHALLAFTLGVKQLIVGVTK--WIPLNHHTVSP 546
           TREHA+L  +LGV QLIV + K   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 28/110 (25%), Positives = 50/110 (45%)
 Frame = +1

Query: 85  VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDVGI 264
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER  GI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 265 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
           ++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 66  SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
 Frame = +1

Query: 7   ELGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE 180
           E+    + ++R  P   ++ T I + V+G+V+SGKST  G L Y     G  +  +  F 
Sbjct: 92  EMRKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLF- 149

Query: 181 KEAQEMGKGSFKYAWVLDKLKAERDVGITIDIALWK-----FETSKYYVTIIDAPGHRDF 345
           +   E+  G  + + +  ++      G  ++ +  +      E S   +T ID  GH  +
Sbjct: 150 RHLHEIQSG--RTSSISHEILGFSCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKY 207

Query: 346 IKNMITGTS--QADCAVLIVAAGTG 414
           +K  I G +    D A+L++A   G
Sbjct: 208 MKTTIFGLTGHSPDYAMLVIAGNAG 232


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 225
           M K+    N+ VI HVD GKST T  L+ K G I   K    +F    ++          
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71

Query: 226 VLDKLKAERDVGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 402
               L  E        I   K    + + + +ID+PGH DF   +       D A+++V 
Sbjct: 72  TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131

Query: 403 AGTG 414
             +G
Sbjct: 132 CVSG 135


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 36/135 (26%), Positives = 57/135 (42%)
 Frame = +1

Query: 49  KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
           K+ +   + NI V+GHVDSGK++    L          +   F+K  Q   +G       
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGI-----T 76

Query: 229 LDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 408
           LD   +   V +   +     E     +T++D PGH   IK +I G      A +I   G
Sbjct: 77  LDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130

Query: 409 TGEFEAGISKNGQTR 453
           T   E G  ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
 Frame = +1

Query: 7   ELGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI 168
           ELG   ++++R   +M +     + + V+G+VD+GKST     T G L    G   +R  
Sbjct: 209 ELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLF 266

Query: 169 -EKFEKEA---QEMGKGSFKYAWVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGH 336
             K E E+     +G     +      +      G  +D A    E+SK  +T ID  GH
Sbjct: 267 RHKHEMESGRTSSVGNDILGFDNTGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGH 325

Query: 337 RDFIKNMITG 366
             ++K  I G
Sbjct: 326 ERYLKTTIFG 335


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 310 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 259 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 405
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 23/65 (35%), Positives = 30/65 (46%)
 Frame = +1

Query: 76   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ER+
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 256  VGITI 270
             GIT+
Sbjct: 1987 RGITV 1991


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 316 IIDAPGHRDFIKNMITGTSQADCAVLIV 399
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +1

Query: 319 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 498
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 499 V 501
           +
Sbjct: 123 I 123


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +3

Query: 519  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLELQPKCLGS 683
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E     + +
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIEFAGAVVRN 1121

Query: 684  RD 689
             D
Sbjct: 1122 ND 1123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,983,974
Number of Sequences: 59808
Number of extensions: 467472
Number of successful extensions: 1312
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)