Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20286
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 78 1e-15
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 36 0.005
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.16
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 31 0.21
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 31 0.21
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 31 0.21
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 30 0.27
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 29 0.48
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.48
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 29 0.48
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.63
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 28 1.1
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 28 1.1
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 28 1.1
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.5
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 28 1.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.9
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 2.5
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 27 2.5
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 27 3.4
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.4
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 4.4
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 4.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 5.9
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 5.9
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 5.9
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 5.9
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 5.9
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 26 5.9
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 26 5.9
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 7.8
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 25 7.8
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 7.8
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.8
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 25 7.8
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 25 7.8
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 7.8
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 78.2 bits (184), Expect = 1e-15
Identities = 46/101 (45%), Positives = 57/101 (56%), Gaps = 16/101 (15%)
Frame = +3
Query: 255 SVGADGSVRMFDLRHLEHSTIIYED----------------PQHTPLLRLAWNKQDPNYL 386
SVGADGSVRMFDLR L+HSTIIYE P PLLRL+ D N +
Sbjct: 227 SVGADGSVRMFDLRSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDSDVNLM 286
Query: 387 ATIAMDACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHS 509
AT ++ +V ++D+RVP T A L H+ VN + W P S
Sbjct: 287 ATFHHNSSDVQMIDIRVPGTAYATLRGHKGDVNAVKWMPGS 327
Score = 70.5 bits (165), Expect = 2e-13
Identities = 35/62 (56%), Positives = 42/62 (67%)
Frame = +1
Query: 37 APLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDI 216
APLTSFDW + DP+ I SS+DTTCT+W + V+ KTQLIAHDKEVYD+
Sbjct: 167 APLTSFDWCKTDPSYIVVSSLDTTCTVWDI-----------VAQQSKTQLIAHDKEVYDV 215
Query: 217 AF 222
AF
Sbjct: 216 AF 217
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 35.9 bits (79), Expect = 0.005
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Frame = +3
Query: 255 SVGADGSVRMFDLRHLEHSTIIYEDPQH-TPLLRLAWNKQDPNYLATIAMDACEVIILDV 431
S DG+ R++D+R+ + ++ + + + L+WN + PN LAT A D + D+
Sbjct: 309 SCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLATGA-DNGVWSVWDL 367
Query: 432 RV------PCTPVARLNNHRACVNGIAWAPH 506
R TPVA HRA + I W P+
Sbjct: 368 RSLKSSSSVATPVASFKWHRAPIYSIEWHPN 398
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 37 APLTSFDWNEVDPNLIGTSSIDTTCTIWGL 126
AP+ S +W+ + ++IG D ++W L
Sbjct: 388 APIYSIEWHPNEDSVIGVVGADNQISLWDL 417
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 354 LAWNKQDPNYLATIAMDACEVIIL--DVRVPCTPVARLNNHRACVNGIAWAP 503
+AW+ + LAT D IIL D+R P P L H+ ++W P
Sbjct: 219 IAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNILTGHQKAALSLSWCP 270
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 49 SFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLG 147
S W DP + +S D +W +ETG+ LG
Sbjct: 265 SLSWCPEDPTFLLSSGKDGRAMVWNVETGESLG 297
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = +3
Query: 255 SVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDACEVIILDVR 434
S G D + D+R EH + + L WN + N LA+ D +++ D +
Sbjct: 348 SGGRDNHILHRDVRAPEHYFRVLT-AHRQEVCGLEWNSNE-NLLASGGNDNA-LMVWD-K 403
Query: 435 VPCTPVARLNNHRACVNGIAWAPH 506
P+ +NH A V I W+PH
Sbjct: 404 FEEKPLYSFHNHIAAVKAITWSPH 427
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 40 PLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIA 219
P TS WN + + + S D T + W L ++ + +K + +H+K+V D+
Sbjct: 186 PCTSVCWNFLSKGTLVSGSQDATLSCWDLNA----YNESDSASVLKVHISSHEKQVSDVR 241
Query: 220 F 222
F
Sbjct: 242 F 242
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVS 165
LTSFD+++ L+ T+S+D T W L TG ++ ++ S
Sbjct: 575 LTSFDFSDTGRWLV-TASLDGTIRTWDLPTGHLIDSISTPS 614
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 ADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAW-NKQDPNYLATIAMDACEVIILDVRVP 440
+D ++++F + + + + + P+ +L W + + LA+ + D ++ +
Sbjct: 29 SDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRETGGV 88
Query: 441 CTPVARLNNHRACVNGIAWAPH 506
+ + H+A VN ++WAPH
Sbjct: 89 WSELMDHTAHQASVNAVSWAPH 110
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 7 ENNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQL 186
+ +NK S F PL +D+ +PN ++ + L GQ V ++ + K +
Sbjct: 17 KGSNKASKFPLPLAMWDFGHCNPNACSGKRLERLGCVRNLRIGQKFRGV-VITPNGKVPV 75
Query: 187 IAHDKEVYD 213
DKE +D
Sbjct: 76 SPADKEYFD 84
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.5 bits (63), Expect = 0.48
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +3
Query: 354 LAWNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSLVTSAPPE 533
+A N + LAT + D V + D+R P + L H V G+ W+PH A
Sbjct: 287 VAINPFNDYLLATASADKT-VALWDLRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSS 345
Query: 534 TTTRL 548
T R+
Sbjct: 346 TDRRV 350
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 360 WNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNHRACVNGIAW---APHSLVTS 521
W++Q+P+ LAT ++D+ V D+R P PV + + W PH L +S
Sbjct: 330 WHRQNPDVLATCSIDS-SVHCWDLRSPRFPVNSFYDWHNGATQVKWNYKNPHILASS 385
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLET 132
+T +W+ +P+++ T SID++ W L +
Sbjct: 325 VTDMNWHRQNPDVLATCSIDSSVHCWDLRS 354
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 29.1 bits (62), Expect = 0.63
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +3
Query: 243 RYVRSVGA-DGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDACEVI 419
R+V S G+ G++ D+R H + + + LAW + D LA+ D V
Sbjct: 273 RHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAW-RSDGLQLASGGNDNV-VQ 329
Query: 420 ILDVRVPCTPVARLNNHRACVNGIAWAP 503
I D R P NH A V +AW P
Sbjct: 330 IWDAR-SSIPKFTKTNHNAAVKAVAWCP 356
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 444 TPVARLNNHRACVNGIAWAPH-SLVTSAPPETTTR 545
TP+A + H V+ +AWAP S++ + + T R
Sbjct: 168 TPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIR 202
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 64 EVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIAFSRAGGGR 243
E DP ++ T S+D+T +W L G+ L ++ H KT ++ F+ A G
Sbjct: 299 EFDPQVV-TGSMDSTIRLWDLAAGKTL---TTLTHHKKT---VRALSLHPDEFTFASGSS 351
Query: 244 DMFAPW 261
D W
Sbjct: 352 DNIKHW 357
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 237 GARYVRSVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMD 404
G+ Y+ +V D + R+FDLR ++ ++ + + W+ PN L T D
Sbjct: 261 GSNYLATVSRDSTCRVFDLRAMKDVRVLRGHEKDVNC--VTWHPLYPNLLTTGGSD 314
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 291 LRHLEHSTIIYEDPQHTPLLRLAWNKQDP 377
L HL+ S + +D QHTPL+ +++ +P
Sbjct: 120 LLHLDISVDLRDDQQHTPLMWASYHGNEP 148
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 506 QSCHICTAGDDHQALIWDIQQMPRAIE--DPILAYTAAEGEVNQIQW 640
Q+C + TA +D + L WD+ R P+ + + VN +++
Sbjct: 194 QNCRLVTAANDSKILEWDLNNFSRDTRCLTPVKDFHYDDSPVNDVEY 240
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -1
Query: 481 THALWLLSLATGVQGTRTSSMITSHASMAMV 389
THALW+ +L +GV T ++ +++ +++ +
Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSI 616
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 118 WGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIAFS 225
W L+TGQ+L + + K IA+ E+Y + ++
Sbjct: 49 WDLKTGQLLSKWKDSDCSAKVTCIANFDEMYAVGYA 84
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 249 VRSVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAT---IAMDACEVI 419
V + G++G + ++D+R S + Q TP +A NK+ N AT + V
Sbjct: 70 VITCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKK--NQFATGSELTRSLASVQ 127
Query: 420 ILDVR 434
+ DVR
Sbjct: 128 LWDVR 132
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = +2
Query: 533 DDHQALIWDIQQMPRAIEDPILAYTAAEGEVNQIQWGATQPDWI 664
DD ++W +++ +A++ + +GE I+ + P WI
Sbjct: 89 DDEWYIVWLLREASKAVKSAFVRIIDEDGEFLLIEAALSLPKWI 132
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 70 DPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDK 201
D L+ + S D+T IW LET L + G V++ +A +
Sbjct: 403 DRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSR 446
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 70 DPNLIGTSSIDTTCTIWGLETGQVLG 147
D +I ++S D T +W TG+V+G
Sbjct: 476 DGRIIASASQDKTIKLWDSSTGEVVG 501
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 330 PQHTPLLRLAWNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNH 470
P H PL+ L+ K+ +Y+ + V +D+R C ++ L NH
Sbjct: 451 PAHIPLMSLSSTKRMASYIKLSILKKMVVYAMDLRGECM-LSWLYNH 496
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 156 IDPAQDLSSLQAPDGAGRVNTTGANEVRIHFV-PIKGCK-RSTEVRILI 16
I P +D +S+ P+GAG+ N A I FV +K RST V+ LI
Sbjct: 21 IGPFEDFTSIIGPNGAGKSNLMDA----ISFVLGVKSSHLRSTNVKELI 65
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1073
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 148 RVNEVSGHVKTQLIAHDKEVYDIAFSRAGGGRD--MFAPWAPTDPSGCST 291
+ N ++ H+K +I DK+ ++I + G D +F P DP+ T
Sbjct: 1018 KTNALTNHLKYSVIRVDKDNHNIVWGLMGCTLDGNIFKILMPNDPTSSDT 1067
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 76 NLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKT 180
N + + S D+T IW L TG+ L + SG++ +
Sbjct: 600 NRLISGSADSTIRIWDLNTGKPLMVLPSNSGYISS 634
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 470 QGVRQRHRLGAAQSCHICTAGDDHQALIWDIQ 565
+GV + A ++ TAGDD+ +WD Q
Sbjct: 185 RGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQ 216
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +3
Query: 447 PVARLNNHRACVNGIAWAPH 506
P+ + H A V I W+PH
Sbjct: 283 PLHKFEEHTAAVKAIGWSPH 302
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 148 RVNEVSGHVKTQLIAHDKEVYDIAFS 225
RV VSG + +L H + VY IAFS
Sbjct: 468 RVWSVSGTLVERLEGHKESVYSIAFS 493
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 255 SVGADGSVRMFDLRHLEHSTIIYE-DPQHTPLLRLAWNKQDPNYLATIAMDACEV 416
S GADG V +FD + + +YE D + ++W+ ++ + A +C++
Sbjct: 206 SAGADGKVYVFDGKTGDQ---VYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKI 257
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 10 NNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIW 120
NN NS T + PNL+G +S D C W
Sbjct: 143 NNGSNSRILTVATHYS----SPNLLGYTSSDGLCKFW 175
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 67 VDPNLIGTSSIDTTCTIWGLETGQVLGRVNEV 162
+ + I T S+DTT +W L+ VL + N V
Sbjct: 382 IQDSFIATGSMDTTVRLWNLD-NDVLHKDNPV 412
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 138 LSSLQAPDGAGRVNTTGANEVR 73
L SL+ PDG+ RVN G ++ R
Sbjct: 136 LFSLKNPDGSFRVNNEGESDAR 157
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 40 PLTSFDWNEVDPNLIGTSSIDTTCTIW 120
P+TS WN P+ T+ +D + W
Sbjct: 252 PVTSCAWNPAKPDNFATAVLDGSIQFW 278
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 61 NEVDPNLIGTSSIDTTCTIWGLE 129
NE+ P LI S+ TC + GLE
Sbjct: 476 NEMSPMLIMNISVAFTCIVMGLE 498
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 40 PLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQ 138
P+ S +W+ D + + S+D + ++ ++TGQ
Sbjct: 76 PVLSVNWSR-DGTKVASGSVDKSAKVFDIQTGQ 107
>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
phosphopantetheinyl transferase Lys7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 205 VYDIAFSRAGGGRDMFAPWAPTDPSG 282
++D S GG + W P+DPSG
Sbjct: 92 IFDFNVSHYGGIVIVVGAWLPSDPSG 117
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 459 LNNHRACVNGIAWAPH-SLVTSAPPETTTRL 548
++ H V G+AW P SA + TTRL
Sbjct: 366 ISGHTKSVKGVAWDPEGKFYLSAGTDQTTRL 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,056
Number of Sequences: 5004
Number of extensions: 54770
Number of successful extensions: 252
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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