Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20286
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 40 0.002
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_10949| Best HMM Match : WD40 (HMM E-Value=3.1e-10) 38 0.008
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 36 0.023
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15) 31 0.66
SB_6741| Best HMM Match : WD40 (HMM E-Value=0) 31 1.2
SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42) 31 1.2
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 30 1.5
SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05) 30 2.0
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 30 2.0
SB_30239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 29 2.7
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.5
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_41590| Best HMM Match : WD40 (HMM E-Value=6.5e-13) 29 3.5
SB_26059| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 29 3.5
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09) 29 3.5
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 29 3.5
SB_7003| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-09) 29 3.5
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 29 3.5
SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6) 29 3.5
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.5
SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031) 29 3.5
SB_5194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_24709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 205 VYDIAFSRAGGGRDMFA 255
VYDIAFSRAGGGRDMFA
Sbjct: 123 VYDIAFSRAGGGRDMFA 139
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 255 SVGADGSVRMFDLR 296
SVGADGSVRMFDLR
Sbjct: 140 SVGADGSVRMFDLR 153
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 279 RMFDLRHLEHSTIIYEDPQHT-PLLRLAWNKQDPNYLATIAMDACEVIILDVRVPCTPVA 455
R++D+R + T ++ H P+ L W+ +D N++AT D C V + DV+ TPV
Sbjct: 403 RLWDMRRTD--TYYHQFMAHNGPVFTLDWHPEDRNWIATGGRDKC-VKVWDVQGKATPVN 459
Query: 456 RLNNHRACVNGIAWAP 503
+ + V+ I W P
Sbjct: 460 NIQT-ISSVSRIKWRP 474
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 246 YVRSVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDA-CEVII 422
++ + G D V+++D++ +T + + + R+ W Q +A+ A+ ++ +
Sbjct: 436 WIATGGRDKCVKVWDVQG--KATPVNNIQTISSVSRIKWRPQKKYQIASCALLVDFDIHV 493
Query: 423 LDVRVPCTPVARLNNHRACVNGIAW 497
D+R P P A + H+ GI W
Sbjct: 494 WDIRRPYIPYATFSEHKDVPTGIMW 518
>SB_10949| Best HMM Match : WD40 (HMM E-Value=3.1e-10)
Length = 193
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 STIIYEDP-QHTPLLRLAWNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNHRACVN 485
+TII D H ++ WNK+D N LAT + D +V I D+R TPV + H + ++
Sbjct: 29 NTIISLDLCNHLGASQVKWNKEDRNVLAT-SHDG-DVRIWDLRKGNTPVVYITAHLSKIH 86
Query: 486 GIAWA 500
G+ W+
Sbjct: 87 GVDWS 91
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 243 RYVRSVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDACEVII 422
R V + DG VR++DLR ++ ++Y + + + W++ LAT + DA V +
Sbjct: 52 RNVLATSHDGDVRIWDLRK-GNTPVVYITAHLSKIHGVDWSRTSGTALATCSNDA-SVKL 109
Query: 423 LDVRVPCTPVARL 461
+ P P A+L
Sbjct: 110 WNTENPRQPEAKL 122
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 34 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHV-KTQLIAHDKEVY 210
C +T+ W+ P+ + TSS D + +W +ET Q + GHV + +
Sbjct: 22 CGRVTALSWSPHHPDRLVTSSYDGSAQVWDVETNQPIANYR---GHVGRVMSVCWSYLDP 78
Query: 211 DIAFSRAGGGRDMFAPW 261
D+ FS GG PW
Sbjct: 79 DVVFS--GGEDGTVRPW 93
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 246 ISPPAGPTERYVVHFLIMSDQLSLHVPRHFIDPAQDLSSLQAPDGAGRVNTTGA 85
++PP+GP R+ H ++ D + + + + P D+ S + P G VN TGA
Sbjct: 402 LAPPSGPRGRFS-HLGLVRDSVMMVLGGYAGMPLGDMMSYKLPQGVAVVNQTGA 454
>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
Length = 365
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 40 PLTSFDWNEVDPNLIGTSSIDTTCTIWGL 126
P+TS +W+ D ++ SS D T+W L
Sbjct: 277 PITSVEWHPTDGSVFAASSADNQITLWDL 305
>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
Length = 714
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 79 LIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVK 177
L+ T+S D+T +W LETG+ L + +G V+
Sbjct: 70 LMATASTDSTLMLWNLETGECLAVLEGHTGAVR 102
>SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)
Length = 198
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 79 LIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVK 177
L+ T+S D+T +W LETG+ L + +G V+
Sbjct: 70 LMATASTDSTLMLWNLETGECLAVLEGHTGAVR 102
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +3
Query: 249 VRSVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDACEVIILD 428
V S DG+VR FDL + + P+ LA + +A + D E+ +
Sbjct: 1308 VLSASLDGTVRAFDLNRYRNFR-TFASPRPAQFSTLALDSSG-EVVAAGSRDTFEIFVWS 1365
Query: 429 VRVPCTPVARLNNHRACVNGIAWAP-HSLVTSAPPETTTRL 548
++ + L H A V+ +A++P H ++ S + T RL
Sbjct: 1366 IQTG-RLLEVLAGHEAPVSSLAFSPSHPVLISGAWDKTVRL 1405
>SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)
Length = 788
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +1
Query: 70 DPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHD 198
D +L+ ++S D + +W + TG+++ + + ++ + L+A D
Sbjct: 349 DGSLVVSASSDNSVNLWNVATGRLVRSIEKAGENISSVLVAKD 391
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 444 TPVARLNNHRACVNGIAWAPHSLVTSA 524
TP+ + + H A V I+W+PH + A
Sbjct: 179 TPIQQYSEHTAAVKAISWSPHQVCNLA 205
>SB_30239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 10 NNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVN--EVSGHVKTQ 183
N K + P+ WN D N+I ++S D + IW + + +N + GH++
Sbjct: 78 NQPKVNGHTRPVLDLGWNPFDDNVIASASEDCSIKIWYIPDCGLCEDLNREDFIGHLQ-- 135
Query: 184 LIAHDKEV 207
HD++V
Sbjct: 136 --GHDRKV 141
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 58 WNEVDPNLIGTSSIDTTCTIWGLETGQVLGRV 153
WN + P+++ ++S D T IWG T + G +
Sbjct: 255 WNPLVPSMMASASDDGTVRIWGPSTEETSGNL 286
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 88 TSSIDTTCTIWGLETGQVLGRVNEVSGHV 174
TSS D TC +W +ET Q + + +G V
Sbjct: 88 TSSGDMTCALWDIETAQTISTYSGHTGDV 116
>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1025
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G +CH+ + DH A+++++ P+ I P
Sbjct: 420 GLVNACHVTSGLSDHSAVLFEVDLAPKYIPKP 451
>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 269 VGAHGANISRPPPALLNAMSYTSLS*AIN*VFTCPDTSL-TLPKTCPVSKPQ 117
+G HGA R PA+++ LS + C DT L PK P++K Q
Sbjct: 423 LGPHGALFFRTDPAIISLPFDACLSSGDQVICMCSDTGLGETPKWEPINKTQ 474
>SB_41590| Best HMM Match : WD40 (HMM E-Value=6.5e-13)
Length = 242
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 73 PNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIA 192
P+L+ TSS D IW +TG + +N H T +A
Sbjct: 187 PSLVATSSYDGCVKIWNADTGHMSCLLNTNKYHSNTAGVA 226
>SB_26059| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 334
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G +CH+ + DH A+++++ P+ I P
Sbjct: 236 GLVNACHVTSGLSDHSAVLFEVDLAPKYIPKP 267
>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
Length = 895
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G +CH+ + DH A+++++ P+ I P
Sbjct: 420 GLVNACHVTSGLSDHSAVLFEVDLAPKYIPKP 451
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G +CH+ + DH A+++++ P+ I P
Sbjct: 255 GLVNACHVTSGISDHSAVLFEVDLAPKYIPKP 286
>SB_7003| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-09)
Length = 378
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G +CH+ + DH A+++++ P+ I P
Sbjct: 249 GLVNACHVTSGLSDHSAVLFEVDLAPKYIPKP 280
>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1855
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G Q+CH+ + DH A++++I P+ P
Sbjct: 1247 GLIQACHVTSGLSDHGAVLFEIDSSPKYTPKP 1278
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G +CH+ + DH A+++++ P+ I P
Sbjct: 323 GLVNACHVTSGLSDHSAVLFEVDLAPKYIPKP 354
>SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)
Length = 291
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G +CH+ + DH A+++++ P+ I P
Sbjct: 38 GLVNACHVTSGLSDHSAVLFEVDLAPKYIPKP 69
>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1009
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G +CH+ + DH A+++++ P+ I P
Sbjct: 293 GLVNACHVTSGLSDHSAVLFEVDLAPKYIPKP 324
>SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031)
Length = 753
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 497 GAAQSCHICTAGDDHQALIWDIQQMPRAIEDP 592
G Q+CH+ + DH A++++I P+ P
Sbjct: 425 GLIQACHVTSGLSDHGAVLFEIDSSPKYTPKP 456
>SB_5194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 70 DPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIA 219
D L+ T+S D T T W L+ + V+E + T +HD +++ A
Sbjct: 103 DDRLMSTTS-DGTITCWDLDNWSHMKSVDEPHNEISTLDFSHDGKIFATA 151
>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +3
Query: 255 SVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLR-LAWNKQDPNYLATIAMDACEVIILDV 431
SV D + ++D R + + HT + L++N LAT + D V + D+
Sbjct: 293 SVADDHKLMIWDTRQTNSNKAAHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 351
Query: 432 RVPCTPVARLNNHRACVNGIAWAPHSLVTSAPPETTTRL 548
R + +H+ + + W+PH+ A T RL
Sbjct: 352 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 390
>SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 70 DPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVK 177
D + T+S D +W +E G+V V E SGH K
Sbjct: 252 DSQYLVTASSDNLARLWNVEAGEV---VREYSGHQK 284
>SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 123 APDGAGRVNTTGANEVRIHFVPIKGCKRSTEVRILI 16
AP +VNT G E + + +GCK T+ + L+
Sbjct: 368 APAQGDKVNTAGCGETKGCYAEPQGCKDHTDCKYLV 403
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 70 DPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHD 198
D I +SS D T IW +ET + ++ GHV+ I D
Sbjct: 801 DSKRIISSSYDKTVKIWDVETCAFVNSLDGHDGHVRGIAITSD 843
>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 306 HSTIIY-EDPQHTPLLRLAWNKQDPNY 383
HS +++ + P P ++ W+KQDPN+
Sbjct: 156 HSAVLHCQAPDSYPDRQIQWSKQDPNF 182
>SB_24709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 458 PGHRGAGHAHVQYDHLARVHGDGGQVVRVLLVPGQAEQRGV 336
PG GAG +++ + R + + +VV+ + PG +E +G+
Sbjct: 196 PGRVGAGRRLAKWNRINRANKEALRVVQSPVAPGPSEPQGL 236
>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 375 PNYLATIAMDACEVIILDVRVPCTPVA 455
P Y A + +DAC ++ + PCTP A
Sbjct: 1292 PKYRARLVLDACTLLSILNSKPCTPGA 1318
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,604,643
Number of Sequences: 59808
Number of extensions: 513469
Number of successful extensions: 1426
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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