Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20286
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 524 CRCDKTVRRPGDAVDARPVVV 462
           CR DK  R PG+     P+ V
Sbjct: 21  CRYDKMTRPPGEINSINPINV 41


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 120 PDGAGRVNTTGANEVRIHF 64
           PD +  + T  A  VRIHF
Sbjct: 229 PDSSSELATRLAEAVRIHF 247


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 575 AASAVCPRSEPGGRLRRCRCDKTVRRPGDAVDA 477
           A+ A   ++EPG  +      K V  PG+ + +
Sbjct: 888 ASQATSVKAEPGSIMAMSESSKKVLSPGELLSS 920


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,562
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)