Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20286
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 126 1e-29
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 126 1e-29
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 126 1e-29
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 124 4e-29
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 119 2e-27
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 45 5e-05
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 33 0.13
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 33 0.18
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 33 0.23
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 32 0.31
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 32 0.41
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 32 0.41
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 31 0.72
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 31 0.95
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 30 1.7
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 30 1.7
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 29 2.2
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 2.2
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 2.2
At4g37220.1 68417.m05269 stress-responsive protein, putative sim... 29 2.9
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 29 2.9
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 2.9
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 29 2.9
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 29 3.8
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 29 3.8
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 5.0
At5g24010.1 68418.m02821 protein kinase family protein contains ... 28 5.0
At2g35550.2 68415.m04355 expressed protein 28 5.0
At2g35550.1 68415.m04354 expressed protein 28 5.0
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 28 5.0
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 28 6.7
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 28 6.7
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 28 6.7
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2... 28 6.7
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 28 6.7
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 6.7
At1g04960.1 68414.m00494 expressed protein 28 6.7
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 27 8.8
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 27 8.8
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 27 8.8
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 27 8.8
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 27 8.8
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 126 bits (305), Expect = 1e-29
Identities = 62/91 (68%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Frame = +3
Query: 240 ARYVRSVGADGSVRMFDLRHLEHSTIIYEDPQ-HTPLLRLAWNKQDPNYLATIAMDACEV 416
AR SV ADGSVR+FDLR EHSTIIYE PQ TPLLRLAWNKQD Y+ATI MD+ +V
Sbjct: 186 ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKV 245
Query: 417 IILDVRVPCTPVARLNNHRACVNGIAWAPHS 509
+ILD+R P PVA L H+A VN IAWAP S
Sbjct: 246 VILDIRSPTMPVAELERHQASVNAIAWAPQS 276
Score = 91.9 bits (218), Expect = 4e-19
Identities = 44/74 (59%), Positives = 53/74 (71%)
Frame = +1
Query: 10 NNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLI 189
NN+K S+FCAPLTSFDWN+V+P +GT SIDTTCTIW +E V+TQLI
Sbjct: 124 NNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIE-----------KSVVETQLI 172
Query: 190 AHDKEVYDIAFSRA 231
AHDKEV+DIA+ A
Sbjct: 173 AHDKEVHDIAWGEA 186
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Frame = +2
Query: 500 AAQSC-HICTAGDDHQALIWDIQQM--PRAIEDPILAYTAAEGEVNQIQWGATQPDWIAI 670
A QSC HIC+ GDD QALIW++ + P I DP+ Y+A E+NQ+QW ++QPDWI I
Sbjct: 273 APQSCKHICSGGDDTQALIWELPTVAGPNGI-DPMSVYSAGS-EINQLQWSSSQPDWIGI 330
Query: 671 CY 676
+
Sbjct: 331 AF 332
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 126 bits (305), Expect = 1e-29
Identities = 62/91 (68%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Frame = +3
Query: 240 ARYVRSVGADGSVRMFDLRHLEHSTIIYEDPQ-HTPLLRLAWNKQDPNYLATIAMDACEV 416
AR SV ADGSVR+FDLR EHSTIIYE PQ TPLLRLAWNKQD Y+ATI MD+ +V
Sbjct: 186 ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKV 245
Query: 417 IILDVRVPCTPVARLNNHRACVNGIAWAPHS 509
+ILD+R P PVA L H+A VN IAWAP S
Sbjct: 246 VILDIRSPTMPVAELERHQASVNAIAWAPQS 276
Score = 91.9 bits (218), Expect = 4e-19
Identities = 44/74 (59%), Positives = 53/74 (71%)
Frame = +1
Query: 10 NNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLI 189
NN+K S+FCAPLTSFDWN+V+P +GT SIDTTCTIW +E V+TQLI
Sbjct: 124 NNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIE-----------KSVVETQLI 172
Query: 190 AHDKEVYDIAFSRA 231
AHDKEV+DIA+ A
Sbjct: 173 AHDKEVHDIAWGEA 186
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Frame = +2
Query: 500 AAQSC-HICTAGDDHQALIWDIQQM--PRAIEDPILAYTAAEGEVNQIQWGATQPDWIAI 670
A QSC HIC+ GDD QALIW++ + P I DP+ Y+A E+NQ+QW ++QPDWI I
Sbjct: 273 APQSCKHICSGGDDTQALIWELPTVAGPNGI-DPMSVYSAGS-EINQLQWSSSQPDWIGI 330
Query: 671 CY 676
+
Sbjct: 331 AF 332
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 126 bits (305), Expect = 1e-29
Identities = 62/91 (68%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Frame = +3
Query: 240 ARYVRSVGADGSVRMFDLRHLEHSTIIYEDPQ-HTPLLRLAWNKQDPNYLATIAMDACEV 416
AR SV ADGSVR+FDLR EHSTIIYE PQ TPLLRLAWNKQD Y+ATI MD+ +V
Sbjct: 186 ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKV 245
Query: 417 IILDVRVPCTPVARLNNHRACVNGIAWAPHS 509
+ILD+R P PVA L H+A VN IAWAP S
Sbjct: 246 VILDIRSPTMPVAELERHQASVNAIAWAPQS 276
Score = 91.9 bits (218), Expect = 4e-19
Identities = 44/74 (59%), Positives = 53/74 (71%)
Frame = +1
Query: 10 NNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLI 189
NN+K S+FCAPLTSFDWN+V+P +GT SIDTTCTIW +E V+TQLI
Sbjct: 124 NNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIE-----------KSVVETQLI 172
Query: 190 AHDKEVYDIAFSRA 231
AHDKEV+DIA+ A
Sbjct: 173 AHDKEVHDIAWGEA 186
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Frame = +2
Query: 500 AAQSC-HICTAGDDHQALIWDIQQM--PRAIEDPILAYTAAEGEVNQIQWGATQPDWIAI 670
A QSC HIC+ GDD QALIW++ + P I DP+ Y+A E+NQ+QW ++QPDWI I
Sbjct: 273 APQSCKHICSGGDDTQALIWELPTVAGPNGI-DPMSVYSAGS-EINQLQWSSSQPDWIGI 330
Query: 671 CY 676
+
Sbjct: 331 AF 332
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 124 bits (300), Expect = 4e-29
Identities = 57/92 (61%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +3
Query: 237 GARYVRSVGADGSVRMFDLRHLEHSTIIYEDPQ-HTPLLRLAWNKQDPNYLATIAMDACE 413
G SV ADGSVR+FDLR EHSTIIYE + TPL+RL WNKQDP Y+ATI MD+ +
Sbjct: 188 GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 247
Query: 414 VIILDVRVPCTPVARLNNHRACVNGIAWAPHS 509
V++LD+R P PV L H+A VN IAWAPHS
Sbjct: 248 VVVLDIRFPALPVVELQRHQASVNAIAWAPHS 279
Score = 92.3 bits (219), Expect = 3e-19
Identities = 45/75 (60%), Positives = 51/75 (68%)
Frame = +1
Query: 10 NNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLI 189
N+NKNS+FC PLTSFDWNE +P IGTSS DTTCTIW +E V TQLI
Sbjct: 127 NSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREA-----------VDTQLI 175
Query: 190 AHDKEVYDIAFSRAG 234
AHDKEV+DIA+ G
Sbjct: 176 AHDKEVFDIAWGGVG 190
Score = 84.6 bits (200), Expect = 5e-17
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
Frame = +2
Query: 509 SCHICTAGDDHQALIWDIQQMPRAIE---DPILAYTAAEGEVNQIQWGATQPDWIAICYN 679
SCHICTAGDD QALIWDI M + +E DPILAYTA E+ Q+QW ++QPDW+AI ++
Sbjct: 280 SCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAG-AEIEQLQWSSSQPDWVAIAFS 338
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 119 bits (286), Expect = 2e-27
Identities = 53/92 (57%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Frame = +3
Query: 237 GARYVRSVGADGSVRMFDLRHLEHSTIIYEDPQ-HTPLLRLAWNKQDPNYLATIAMDACE 413
G SV DGSVR+FDLR EHSTIIYE + TPL+RL+WNKQDP Y+AT+ M + +
Sbjct: 188 GVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAK 247
Query: 414 VIILDVRVPCTPVARLNNHRACVNGIAWAPHS 509
+++LD+R P PV L H+A VN IAWAPHS
Sbjct: 248 IVVLDIRFPALPVVELQRHQASVNAIAWAPHS 279
Score = 88.6 bits (210), Expect = 3e-18
Identities = 45/75 (60%), Positives = 53/75 (70%)
Frame = +1
Query: 10 NNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLI 189
+++KNS+F P+TSFDWNE +P IGTSSIDTTCTIW +E EV V TQLI
Sbjct: 127 SSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIE--------REV---VDTQLI 175
Query: 190 AHDKEVYDIAFSRAG 234
AHDKEVYDIA+ G
Sbjct: 176 AHDKEVYDIAWGGVG 190
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
Frame = +2
Query: 509 SCHICTAGDDHQALIWDIQQMPRAIE---DPILAYTAAEGEVNQIQWGATQPDWIAICYN 679
S HIC+AGDD QALIWDI M + +E DPILAYTA EV Q+QW ++QPDW+AI ++
Sbjct: 280 SSHICSAGDDSQALIWDISSMGQHVEGGLDPILAYTAG-AEVEQLQWSSSQPDWVAIAFS 338
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 44.8 bits (101), Expect = 5e-05
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +3
Query: 255 SVGADGSVRMFDLRHLEHSTIIYEDPQHT-PLLRLAWNKQDPNYLATIAMDACEVIILDV 431
S D ++R++D+R + II P H +L WNK D LAT ++D V + DV
Sbjct: 167 SASGDCTLRIWDVREPGSTMII---PAHDFEILSCDWNKYDDCILATSSVDKT-VKVWDV 222
Query: 432 RVPCTPVARLNNHRACVNGIAWAPH--SLVTS 521
R P+A LN H V + ++PH SL+ S
Sbjct: 223 RSYRVPLAVLNGHGYAVRKVKFSPHRRSLIAS 254
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQV 141
+ S DWN+ D ++ TSS+D T +W + + +V
Sbjct: 195 ILSCDWNKYDDCILATSSVDKTVKVWDVRSYRV 227
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +3
Query: 321 YEDPQHT-PLLRLAWNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNHRACVNGIAW 497
Y+ HT +L LAWNK+ N LA+ + D +V + DV + + +H V +AW
Sbjct: 227 YKQGSHTRSVLGLAWNKEFRNILASASADK-KVKVWDVATGTCKIT-MEHHTKEVQAVAW 284
Query: 498 ---APHSLVTSAPPET 536
AP L++ + +T
Sbjct: 285 NHYAPEVLLSGSFDQT 300
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +1
Query: 7 ENNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETG 135
E N K + WN+ N++ ++S D +W + TG
Sbjct: 224 EGNYKQGSHTRSVLGLAWNKEFRNILASASADKKVKVWDVATG 266
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 46 TSFDWNEVDPNLIGTSSIDTTCTIWGLETGQ 138
TS +N PNL+ T S D T +W L +
Sbjct: 373 TSVSYNISAPNLLATGSKDRTVKLWDLSNNE 403
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 295 LRSNIRTDPSAPTERTYLAPR-RPY*TLCRTLPYHERSTESSRAQTLH*PCPRPVQSP 125
L S I PS P++R Y P R Y R P H +ES + + P P PV P
Sbjct: 24 LTSKIAAAPSIPSKRPYPVPEERQYKPPRRPYPPHGSYSESQTSSSFSIPVPVPVPVP 81
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +3
Query: 321 YEDPQHTP-LLRLAWNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNHRACVNGIAW 497
+++ HT +L LAWNK+ N LA+ + D +V + DV + + +H V +AW
Sbjct: 259 FKEGSHTESVLGLAWNKEFRNILASASADK-KVKVWDVATGTCKIT-MEHHTKEVQAVAW 316
Query: 498 ---APHSLVTSAPPET 536
AP L++ + +T
Sbjct: 317 NHYAPEVLLSGSFDQT 332
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQ 138
++S +N PNL+ T S+D + +W L +
Sbjct: 407 VSSISYNISTPNLLATGSMDKSVKLWDLSNNE 438
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 354 LAWNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNHRACVNGIAW 497
L W+ + N A+ ++D V + D+R+ +P H A VN I+W
Sbjct: 275 LQWSPAEENVFASCSVDG-SVAVWDIRLGKSPALSFKAHNADVNVISW 321
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 40 PLTSFDWNEVDPNLIGTSSIDTTCTIWGL 126
P+TS +W+ + + + +S D TIW L
Sbjct: 362 PITSIEWSAHEASTLAVTSGDNQLTIWDL 390
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 31.9 bits (69), Expect = 0.41
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = +3
Query: 255 SVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDACEVIILDVR 434
SVG D + ++D R + E L + WN D N + T + D V + D R
Sbjct: 299 SVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADN-TVRVFDRR 357
Query: 435 VPC-----TPVARLNNHRACVNGIAWAP 503
+PV + HRA V + W+P
Sbjct: 358 NLTSNGVGSPVYKFEGHRAAVLCVQWSP 385
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +1
Query: 37 APLTSFDWNEVDPNLIGTSSIDTTCTIW---GLETGQVLGRVNEVSGH 171
A L DWN D NLI T S D T ++ L + V V + GH
Sbjct: 327 ADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGH 374
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 19 KNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGR 150
+++D A +TS W++ L+ S+ D + T+W + TG+ + R
Sbjct: 62 RDNDCSAAITSVSWSKYGHRLL-VSAADKSLTLWDVSTGEKIAR 104
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 336 HTPLLR-LAWNKQDPNYLATIAMDACEVIILDVRVPCTP-VARLNNHRACVNGIAWAPHS 509
HT + LAW+ + +AT ++D C VI+ +V P + + N H VN +A+
Sbjct: 398 HTARINSLAWSPNN-KMVATGSIDTC-VIVYEVDKPASSRITARNAHLGGVNAVAFIDDC 455
Query: 510 LVTSAPPETTTRL 548
V S+ + + RL
Sbjct: 456 TVASSGEDASVRL 468
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 515 HICTAGDDHQALIWDIQQMPRAIE-DPILAYTAAEGEVNQIQW 640
H+ + DD Q +WDI P+ D + A EG V + W
Sbjct: 193 HLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAW 235
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +3
Query: 255 SVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDACEVII---- 422
SVG D + ++D R + E L + WN D N + T + D +
Sbjct: 310 SVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRK 369
Query: 423 LDVRVPCTPVARLNNHRACVNGIAWAP 503
L +P+ + H+A V + W+P
Sbjct: 370 LTANGVGSPIYKFEGHKAAVLCVQWSP 396
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLET 132
+ S D+N +P+++ TSS D T +W L +
Sbjct: 351 INSIDFNPQNPHVMATSSTDGTACLWDLRS 380
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = +3
Query: 255 SVGADGSVRMFDLR--HLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDACEVIILD 428
S G D + ++DLR ++H ++E + L++N + LAT + D+ V + D
Sbjct: 236 SAGDDCQLVIWDLRTNQMQHQVKVHE----REINYLSFNPFNEWVLATASSDST-VALFD 290
Query: 429 VRVPCTPVARLNNHRACVNGIAWAP-HSLVTSAPPE 533
+R P+ L+ H V + W P H V ++ E
Sbjct: 291 LRKLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGE 326
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 49 SFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRV 153
S D++ DP L+ + S D + +W + G +G +
Sbjct: 581 SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 615
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 49 SFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRV 153
S D++ DP L+ + S D + +W + G +G +
Sbjct: 581 SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 615
>At4g37220.1 68417.m05269 stress-responsive protein, putative
similar to cold acclimation WCOR413-like protein gamma
form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar
to stress-regulated protein SAP1 [Xerophyta viscosa]
gi|21360378|gb|AAM47505
Length = 202
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 14 IIRILTSVLLLHPLIGTKWILTSLAPVVLTRPAPSG-AWRLDRSWAGSMKCL 166
I I V L P +W+ +A +++ +PS AW L SW G++ CL
Sbjct: 102 IALIAIIVRLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICL 153
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 447 PVARLNNHRACVNGIAWAPH 506
PV + + H A V IAW+PH
Sbjct: 369 PVLKYSEHTAAVKAIAWSPH 388
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 447 PVARLNNHRACVNGIAWAPH 506
PV R H A V IAW+PH
Sbjct: 326 PVLRFCEHAAAVKAIAWSPH 345
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 465 NHRACVNGIAWAPHSL 512
+H+ VN IAWAPH L
Sbjct: 101 DHKVSVNSIAWAPHEL 116
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 447 PVARLNNHRACVNGIAWAPH 506
P+ +L H A V I W+PH
Sbjct: 332 PILKLTEHTAAVKAITWSPH 351
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 465 NHRACVNGIAWAPHSL 512
+H++ VN IAWAPH +
Sbjct: 101 DHKSSVNSIAWAPHDI 116
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQ 138
L+ DW+ + N I T S D T +W ++TG+
Sbjct: 502 LSDVDWHP-NCNYIATGSSDKTVRLWDVQTGE 532
>At5g24010.1 68418.m02821 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 824
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 105 RVNTTGANEVRIHFVPIKGCK---RSTEVRILI 16
+V T G + +R+HF P K + RS + R+LI
Sbjct: 98 QVTTKGTHFIRLHFAPFKASRFNLRSAKFRVLI 130
>At2g35550.2 68415.m04355 expressed protein
Length = 226
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 7 ENNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGL 126
+ KN D ++SFD + V P + + + C WG+
Sbjct: 113 KREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGM 152
>At2g35550.1 68415.m04354 expressed protein
Length = 271
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 7 ENNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGL 126
+ KN D ++SFD + V P + + + C WG+
Sbjct: 158 KREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGM 197
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIAF 222
L+ WN+ + N I +S + T+W + T Q L E H+K + + F
Sbjct: 423 LSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEE-----------HEKRAWSVDF 471
Query: 223 SR 228
SR
Sbjct: 472 SR 473
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 40 PLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIA 219
P+ + D++ + L+ T+ D +W + +GQ +V VS ++ L H V I
Sbjct: 15 PVLTVDFHPIS-GLLATAGADYDIKLWLINSGQAEKKVPSVS--YQSSLTYHGCAVNTIR 71
Query: 220 FSRAG 234
FS +G
Sbjct: 72 FSPSG 76
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 40 PLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIA 219
P+ + D++ + L+ T+ D +W + +GQ +V VS ++ L H V I
Sbjct: 15 PVLTVDFHPIS-GLLATAGADYDIKLWLINSGQAEKKVPSVS--YQSSLTYHGCAVNTIR 71
Query: 220 FSRAG 234
FS +G
Sbjct: 72 FSPSG 76
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 4 HENNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVL 144
H +N +S L S V+ L TSS+D ++W L+ G+++
Sbjct: 186 HTSNQISSQHKRKLRSLILCPVNEQLFATSSLDGMVSLWQLQPGRLV 232
>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
(GLR3) plant glutamate receptor family, PMID:11379626
Length = 909
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -1
Query: 595 DRVFYGARHLLYVPDQSLVVVSGGADVTRLCGAQAMPLTHALWLLSL 455
+R Y L Y P +VV V R MPLT ALWL+SL
Sbjct: 537 NRSMYVDFSLPYTPSGVGLVVPVKDSVRRSSTIFLMPLTLALWLISL 583
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIAF 222
L+ WN N + +S D +W + TGQ + + I H+K + + F
Sbjct: 756 LSGVCWNNYIRNYLASSDYDGIVKLWDVTTGQAI-----------SHFIEHEKRAWSVDF 804
Query: 223 SRA 231
S A
Sbjct: 805 SEA 807
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -1
Query: 373 SCLFQARRSSGVCWGSS*MMVECSRCLRSNIRTDPSAPTERTYLAPRRPY*TLCRTLPYH 194
SC ARR G C S C +S+I T +R Y +P P L H
Sbjct: 138 SCNQLARRDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCSCSVSKLSVH 197
Query: 193 ERS-TESSRAQT 161
S +E SR +
Sbjct: 198 HSSHSEISRTSS 209
>At1g04960.1 68414.m00494 expressed protein
Length = 317
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 354 LAWNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNHRACVNGIAW 497
L K+D N + M A E++++ + T R HRA GI+W
Sbjct: 263 LTEGKEDANVIHKPVM-AKEIMVMGEKTKVTAAGRSRVHRAFPGGISW 309
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 58 WNEVDPNLIGTSSIDTTCTIWG 123
WN +P ++ ++S D T IWG
Sbjct: 493 WNPKNPRMLASASDDQTIRIWG 514
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQ 138
++S +N PNL+ T S D + +W L Q
Sbjct: 348 VSSISYNIHAPNLLATGSADESVKLWDLSNNQ 379
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 37 APLTSFDWNEVDPNLIGTSSIDTTCTIWGLETG 135
A + +W+ D +++ + S+D T IW + TG
Sbjct: 119 ADVVDLNWSP-DDSMLASGSLDNTVHIWNMRTG 150
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 79 LIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDK 201
++ T+S D T W ETG+ + HV I DK
Sbjct: 7 ILATASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITPDK 47
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 43 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVL 144
+T ++N V+ N + SID IWGL +V+
Sbjct: 315 VTCVEFNPVNKNNFASGSIDGKARIWGLSEERVV 348
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,261,336
Number of Sequences: 28952
Number of extensions: 329532
Number of successful extensions: 1237
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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