Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20284
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    40   5e-04
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    37   0.003
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   4.8  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   8.3  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +2

Query: 638 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEL 727
           Q+ V KG H K  RK+R S  FRRPKT EL
Sbjct: 10  QKTVQKGIHNKVARKVRTSTTFRRPKTLEL 39


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 638 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEL 727
           Q+ V KG H K  +K+R S  FRRPKT +L
Sbjct: 10  QKTVQKGIHNKVAKKVRTSTTFRRPKTLQL 39


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 715 LGSAEMHRVANFPYSLPMFTFY--NLPLSLKCFSNRFHYFFCPLIPVFLGFGAIF 557
           LG      +A+   + P+ TF   N  +SL   +NR   FFC +I  F+G  A F
Sbjct: 385 LGDGLASLIASLMTTTPLTTFAQNNGVISLTKCANRRAGFFCAVILFFMGLFAKF 439


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 72  LLPVSFPRVWTRRTRISRVASSS 4
           ++P+ FPR W+   + S+VA  S
Sbjct: 170 IIPLFFPRAWSPTVKFSKVARPS 192


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 682 FPYSLPMFTFYNLPLSLKCFSNRFHYFFCPLIPVFLGFGAIFNL 551
           + Y LP+  F  +PL +   S RF+    P   +F+  G +F L
Sbjct: 275 YAYLLPLCVFV-IPLIILAVSKRFYKHTPPSGSIFVRVGQVFFL 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,167
Number of Sequences: 5004
Number of extensions: 18567
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)