Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20284
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    30   2.2  
03_06_0258 + 32706396-32706821                                         30   2.2  
05_07_0091 + 27640863-27641788,27643186-27643444,27643993-276440...    28   6.6  
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    28   8.7  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           28   8.7  

>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 157 GTCPESSCACPEISCACPETSCACPESSC 243
           GTC E  C CP++ C      C C +S C
Sbjct: 667 GTCCEKYCGCPKM-CKNRFRGCHCAKSQC 694


>03_06_0258 + 32706396-32706821
          Length = 141

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 603 FFVP*SQSFWASVQSSIWKLLAWVWQ 526
           FFVP S S W    SS   L +W+W+
Sbjct: 55  FFVPSSSSSWICPSSSTRLLASWIWR 80


>05_07_0091 +
           27640863-27641788,27643186-27643444,27643993-27644070,
           27644324-27644398
          Length = 445

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 634 LKCFSNRFHYFFCPLIPVFLGFGAIFNLE 548
           L C    FH F C ++ +F+GF   F+++
Sbjct: 84  LSCKRLAFHLFVCFMVGIFIGFMPFFSVD 112


>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 644 KVVK-GEHGKRVRKIRNSVHFRRPKTFE 724
           K VK G   K  +KIR SV F RPKT +
Sbjct: 32  KAVKSGTAKKTTKKIRTSVTFHRPKTLK 59


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 160 TCPESSCACPEISCACPETSCA 225
           TCP + C CPE  C     S A
Sbjct: 122 TCPHAPCFCPEPGCGFAAASAA 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,777,182
Number of Sequences: 37544
Number of extensions: 125938
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)