Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20284
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9) 30 2.2
SB_20444| Best HMM Match : F-box (HMM E-Value=5.2) 29 3.8
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 28 6.7
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 28 8.9
SB_7889| Best HMM Match : VWC (HMM E-Value=2.6) 28 8.9
>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 638 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEL 727
++ V KG + +K+R SV F RPKT L
Sbjct: 143 KKAVQKGVRAAKTKKVRTSVKFHRPKTLSL 172
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 31.1 bits (67), Expect = 0.95
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 154 TGTCPESSCACPEISCACPETSCACPESSCLCP 252
T P+++ A PE + A PE + A PE++ P
Sbjct: 39 TTAAPDATTAAPEATTAAPEATTAAPEATTAAP 71
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 154 TGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
T P+++ A P+ + A PE + A PE++ P+
Sbjct: 32 TTAAPDATTAAPDATTAAPEATTAAPEATTAAPE 65
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 154 TGTCPESSCACPEISCACPETSCACPESSCLCP 252
T PE++ A PE + A PE + A P + P
Sbjct: 46 TTAAPEATTAAPEATTAAPEATTAAPVETTAGP 78
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + CPE + P+
Sbjct: 84 EGNSTSPEGNSASPEGNSTSPEGNSTCPEGNSTSPE 119
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + A PE + A PE + P+
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGNSTSPE 168
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + CPE + PE + PE + P+
Sbjct: 98 EGNSTSPEGNSTCPEGNSTSPEGNSTSPEGNSTSPE 133
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ TCPE + PE + PE + PE + P+
Sbjct: 105 EGNSTCPEGNSTSPEGNSTSPEGNSTSPEGNSTSPE 140
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ PE + PE + A PE + PE + CP+
Sbjct: 77 EGNSASPEGNSTSPEGNSASPEGNSTSPEGNSTCPE 112
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + A PE + P+
Sbjct: 10 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 45
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + A PE + P+
Sbjct: 70 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 105
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + PE + A PE + A PE + P+
Sbjct: 126 EGNSTSPEGNSTSPEGNSASPEGNSASPEGNSASPE 161
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + A PE + P+
Sbjct: 196 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 231
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + A PE + P+
Sbjct: 210 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 245
>SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)
Length = 117
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCP 252
CP + ACP CP T CP + CP
Sbjct: 4 CPLTLLACPLTLFTCPLTPFTCPLTPFTCP 33
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 160 TCPESSCACPEISCACPETSCACPESSCLCP 252
TCP + CP CP T CP CP
Sbjct: 24 TCPLTPFTCPLPPFTCPLTLLTCPLDMLSCP 54
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 160 TCPESSCACPEISCACPETSCACPESSCLCP 252
TCP + CP CP CP + CP
Sbjct: 17 TCPLTPFTCPLTPFTCPLPPFTCPLTLLTCP 47
>SB_20444| Best HMM Match : F-box (HMM E-Value=5.2)
Length = 332
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCP 252
CP + P C CP P CLCP
Sbjct: 60 CPSAFALLPLPYCLCPNAFALLPLPYCLCP 89
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCP 252
CP + P C CP P CLCP
Sbjct: 74 CPNAFALLPLPYCLCPSAFALLPLPYCLCP 103
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCP 252
C + + C + + C S CP+ S LCP
Sbjct: 998 CLKDNVMCSKDAVTCQNRSVTCPKYSVLCP 1027
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCPQ 255
C CA + CA P CA P C P+
Sbjct: 830 CTSVICAISHVICAIPCMMCAIPRVICAIPR 860
>SB_7889| Best HMM Match : VWC (HMM E-Value=2.6)
Length = 203
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLC 249
CP+ CPE A PES+C C
Sbjct: 31 CPQMMIKCPENQRVAYHEGPAVPESTCTC 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,258,555
Number of Sequences: 59808
Number of extensions: 143227
Number of successful extensions: 726
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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