Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20283
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0263 + 1743661-1743694,1744939-1745236,1745318-1745417,174... 31 0.81
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 31 1.4
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107... 30 2.5
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 29 3.3
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 28 7.5
12_01_0983 - 9979572-9980570,9980878-9981544,9982864-9983217,998... 28 7.5
06_03_0743 + 24069752-24070483,24071890-24072345 28 7.5
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 28 9.9
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 28 9.9
>02_01_0263 +
1743661-1743694,1744939-1745236,1745318-1745417,
1745500-1745766,1745859-1745936,1746023-1746124,
1746205-1746254,1746347-1746446,1746550-1746648,
1746742-1746858,1747187-1747313,1747396-1747793,
1747900-1748004
Length = 624
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 548 IMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPP 682
I+DV+ + LK +K + +L K D P L Q+ IVNA P
Sbjct: 227 ILDVQGVGLKNFSKTARELIVRLQKIDNDNYPETLYQMFIVNAGP 271
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 548 IMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNA 676
I+DV+ + LK +K + +L K D P L++++I+NA
Sbjct: 334 ILDVQGVGLKNFSKAARDLITRLQKIDNDNYPETLRRMYIINA 376
>09_04_0537 +
18410201-18410207,18410301-18410586,18410674-18410773,
18410881-18411147,18411286-18411363,18411444-18411545,
18411628-18411677,18411793-18411889,18412248-18412361,
18412495-18412666,18412865-18413217,18413812-18413898,
18413981-18414001
Length = 577
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 548 IMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNA 676
I+DV + LK +K + ++ K D P L Q+++VNA
Sbjct: 214 ILDVHGVGLKNFSKTARELVHRMQKIDSDYYPETLHQMYVVNA 256
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 548 IMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNA 676
I+DV+ + LK +K + +L K D P L +++I+NA
Sbjct: 508 ILDVQGVGLKNFSKDARELIMRLQKINNDNYPETLHRLYIINA 550
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 178 LKEWANRQPNLPKDIEDAILLQFLHSVT 261
+K+W N+ L DIED I L FLH V+
Sbjct: 66 VKDWRNKVRELSYDIEDCIDL-FLHKVS 92
>12_01_0983 -
9979572-9980570,9980878-9981544,9982864-9983217,
9983334-9983668
Length = 784
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 178 LKEWANRQPNLPKDIEDAILLQFLHSVT 261
+K+W N+ L DIED I L FLH V+
Sbjct: 66 VKDWRNKVRELSYDIEDCIDL-FLHKVS 92
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 186 MGEPATEFAQGYRRRNSFTIPTQCYYDLDKSKVTLEL-FCGIRSSSPELFTNRDPSSPPM 362
MG+P T F +GY + P F G+ SS L PSSPP+
Sbjct: 1 MGDPYTNFLRGYHHHHRSHHPLHFPPPPPPPPPPYAASFSGLYSSY--LHPPPPPSSPPI 58
Query: 363 KKALQILNL 389
++AL +L+L
Sbjct: 59 REALPLLSL 67
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 548 IMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNA 676
I+DV+ + K +K + ++ K D P L Q+ +VNA
Sbjct: 210 ILDVQGVGFKNFSKTARELINRMQKIDSDYYPETLHQMFVVNA 252
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 339 RDPSSPPMKKALQILNLAHYEIPGRRFVW--IWQLNDPSLENYDYVQDAKVFMLTTDS 506
+ P+ P + +I+ +AHY + R VW IW++ + +++ V + DS
Sbjct: 1032 QSPTDPRIFCLTKIVEIAHYNVNRIRLVWSRIWKVLSEFFVSVGLLENLSVAIFVMDS 1089
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,953,266
Number of Sequences: 37544
Number of extensions: 389563
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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