Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20283
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_17827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_46230| Best HMM Match : Adeno_PX (HMM E-Value=3)                    28   7.7  
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_11579| Best HMM Match : BRF1 (HMM E-Value=5.2)                      28   7.7  
SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)                     28   7.7  
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 414 RFVWIWQLNDPSLENYDYVQDAKVFMLTTDSCC 512
           RF+W W+ ND SLE  DY     +F  T+   C
Sbjct: 642 RFIW-WKDNDFSLEPIDYRMTVHLFGATSSPSC 673


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 261  YDLDKSKVTLELFCGIRSSSPELFTNRDPSSPPMKKALQILNLAHYEIPGR 413
            Y +DK K++   F G +++SP  F ++ PS+  +K  + +++L    +PGR
Sbjct: 4085 YGMDKLKISYIGF-GDKTTSPISFKDKFPSAEDLKSRIDVISL----VPGR 4130


>SB_17827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +3

Query: 354 PPMKKALQILNLAHYEIPGRRFVW-----IWQLNDPSLEN 458
           P  +  L+ILNLA + +PG+ + W       +LNDP + N
Sbjct: 2   PFYENDLEILNLALFCLPGQYYCWQEDPVFVKLNDPEIPN 41


>SB_46230| Best HMM Match : Adeno_PX (HMM E-Value=3)
          Length = 859

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 723 LHESFNNAYNLSTNGGAFTM*ICFRRIGIASS*YFDSF 610
           +H+      NL  + GA T  +C+R I      YFDSF
Sbjct: 743 IHKKECGIVNLDDSRGAGTYWVCYRNIDDTYCQYFDSF 780


>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 374  QSLLHWRRRRISVGEQFR*RRTYAA--EQLQRDLRLVQVIVTLCRNC 240
            Q +L  R + +   EQ R +  YAA  +++ +DLR + +++ L R+C
Sbjct: 987  QQVLDLRDKILEEQEQSRKKEEYAANLKRMYKDLRRLVLLIALIRSC 1033


>SB_11579| Best HMM Match : BRF1 (HMM E-Value=5.2)
          Length = 118

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 723 LHESFNNAYNLSTNGGAFTM*ICFRRIGIASS*YFDSF 610
           +H       NL  + GA T  +C+R I      YFDSF
Sbjct: 81  IHRKECGVVNLDDSRGAGTHWVCYRNIDDTHCEYFDSF 118


>SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)
          Length = 1023

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 723 LHESFNNAYNLSTNGGAFTM*ICFRRIGIASS*YFDSF 610
           +H       NL  + GA T  +C+R I      YFDSF
Sbjct: 851 IHRKEFGVVNLDDSKGAGTHWVCYRNIDDTHCEYFDSF 888


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 563  DISLKFITKFNVSVAKKLSKYQEDAMPIRLKQ-IHIVNAPP 682
            D  L      N +  K+L+KYQEDA+   L Q   ++  PP
Sbjct: 1973 DKPLSISEDVNTTAFKRLNKYQEDAIKEALTQPFTLIQGPP 2013


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,594,147
Number of Sequences: 59808
Number of extensions: 466246
Number of successful extensions: 1923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)