Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20283
(801 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97053-6|CAI19686.1| 342|Homo sapiens chromosome 20 open readin... 43 0.001
BC003071-1|AAH03071.2| 342|Homo sapiens chromosome 20 open read... 43 0.001
AL132772-9|CAI18861.1| 342|Homo sapiens chromosome 20 open read... 43 0.001
BC042617-1|AAH42617.1| 354|Homo sapiens retinaldehyde binding p... 35 0.39
AY094971-1|AAM15733.1| 354|Homo sapiens cellular retinaldehyde-... 35 0.39
U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer... 33 1.6
D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer... 33 1.6
BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha) tran... 33 1.6
BC101377-1|AAI01378.1| 327|Homo sapiens retinaldehyde binding p... 32 2.8
BC101376-1|AAI01377.1| 327|Homo sapiens retinaldehyde binding p... 32 2.8
AL591428-3|CAI12307.1| 181|Homo sapiens protein ( to hypothetic... 32 2.8
AL591428-2|CAI12306.1| 327|Homo sapiens protein ( to hypothetic... 32 2.8
Z97053-5|CAI19685.1| 279|Homo sapiens chromosome 20 open readin... 30 8.5
AL132772-8|CAI18860.1| 279|Homo sapiens chromosome 20 open read... 30 8.5
>Z97053-6|CAI19686.1| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLYA 703
+++ D K +SL + F +AKK+ +D PIR+K +H+VN P ++A
Sbjct: 184 VILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFA 237
>BC003071-1|AAH03071.2| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLYA 703
+++ D K +SL + F +AKK+ +D PIR+K +H+VN P ++A
Sbjct: 184 VILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFA 237
>AL132772-9|CAI18861.1| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLYA 703
+++ D K +SL + F +AKK+ +D PIR+K +H+VN P ++A
Sbjct: 184 VILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFA 237
>BC042617-1|AAH42617.1| 354|Homo sapiens retinaldehyde binding
protein 1-like 1 protein.
Length = 354
Score = 34.7 bits (76), Expect = 0.39
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLY 700
++I+D + S K +K S+ K + +D+ P R +H VN P ++ LY
Sbjct: 181 ILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALY 233
>AY094971-1|AAM15733.1| 354|Homo sapiens cellular
retinaldehyde-binding protein-like protein protein.
Length = 354
Score = 34.7 bits (76), Expect = 0.39
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLY 700
++I+D + S K +K S+ K + +D+ P R +H VN P ++ LY
Sbjct: 181 ILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALY 233
>U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 32.7 bits (71), Expect = 1.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 548 IMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAP 679
I D++ + SVAKK++ D+ P++++ IH++N P
Sbjct: 157 IFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEP 200
>D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 32.7 bits (71), Expect = 1.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 548 IMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAP 679
I D++ + SVAKK++ D+ P++++ IH++N P
Sbjct: 157 IFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEP 200
>BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha)
transfer protein protein.
Length = 278
Score = 32.7 bits (71), Expect = 1.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 548 IMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAP 679
I D++ + SVAKK++ D+ P++++ IH++N P
Sbjct: 157 IFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEP 200
>BC101377-1|AAI01378.1| 327|Homo sapiens retinaldehyde binding
protein 1-like 2 protein.
Length = 327
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLY 700
++I+D + + K +K S+ + + +D+ P R IH VN P ++ LY
Sbjct: 159 VLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALY 211
>BC101376-1|AAI01377.1| 327|Homo sapiens retinaldehyde binding
protein 1-like 2 protein.
Length = 327
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLY 700
++I+D + + K +K S+ + + +D+ P R IH VN P ++ LY
Sbjct: 159 VLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALY 211
>AL591428-3|CAI12307.1| 181|Homo sapiens protein ( to hypothetical
proteins from ).).
Length = 181
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLY 700
++I+D + + K +K S+ + + +D+ P R IH VN P ++ LY
Sbjct: 13 VLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALY 65
>AL591428-2|CAI12306.1| 327|Homo sapiens protein ( to hypothetical
proteins from ).).
Length = 327
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLY 700
++I+D + + K +K S+ + + +D+ P R IH VN P ++ LY
Sbjct: 159 VLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALY 211
>Z97053-5|CAI19685.1| 279|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 279
Score = 30.3 bits (65), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 617 SKYQEDAMPIRLKQIHIVNAPPFVDKLYA 703
S+ +D PIR+K +H+VN P ++A
Sbjct: 175 SEETQDGFPIRIKAVHVVNEPRIFKGIFA 203
>AL132772-8|CAI18860.1| 279|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 279
Score = 30.3 bits (65), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 617 SKYQEDAMPIRLKQIHIVNAPPFVDKLYA 703
S+ +D PIR+K +H+VN P ++A
Sbjct: 175 SEETQDGFPIRIKAVHVVNEPRIFKGIFA 203
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,660,044
Number of Sequences: 237096
Number of extensions: 2129099
Number of successful extensions: 4810
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4810
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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