Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20283
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical
           protein F32D8.3 protein.
          Length = 245

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 589 IQRVRCKETIEISGGRNADTSEADSHCERPSVC 687
           IQR+R  +T  I+G  N    ++ SHC   S C
Sbjct: 46  IQRLRMNDTTRINGEENCPMFQSFSHCACESTC 78


>U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical
           protein T27A10.7 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +2

Query: 542 MVIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLYA 703
           ++IMD+   S+  +    + V   L    ++  P   ++I+I+N P  +  +YA
Sbjct: 164 IIIMDLDGFSMDLLYTPTLKVYMSLLTMLQNIFPDFARRIYIINCPAMMSAVYA 217


>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 545 VIMDVKDISLKFITKFNVSVAKKLSKYQEDAMPIRLKQIHIVNAPPFVDKLYA 703
           VI D+  +S+  I    + V   +    ++  P  +++I IVN P F+  L++
Sbjct: 172 VIFDLDGLSMVQIDLAALKVVTTMLSQLQEMFPDVIRKIFIVNTPTFIQVLWS 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,618,011
Number of Sequences: 27780
Number of extensions: 358233
Number of successful extensions: 850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)