Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20282
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   3e-20
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.015
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_1582| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)                    27   6.7  
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)                     27   8.9  
SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)              27   8.9  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 42/63 (66%), Positives = 54/63 (85%)
 Frame = +1

Query: 73  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 252
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 253 TTS 261
            ++
Sbjct: 61  LSA 63



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 375 SDDDMGFGLFD 407
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 252 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 106
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 169 KAAAVDVEPYWPGLFAKALEGINVRDLITTSALEWVLL 282
           + AAV+  P W G  A  +E   V D+  + AL+ +L+
Sbjct: 234 ECAAVEFLPKWKGFVAAGMEQDKVEDITLSQALDQILM 271


>SB_1582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 282 EQHPLQSRCCDQVTDIDAFQGFGEQTW 202
           +  PL  +C  Q TD+D ++  G  TW
Sbjct: 87  DMSPLWRKCHSQFTDVDDYRRHGNNTW 113


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 375 SDDDMGFGLFD 407
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)
          Length = 532

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 261 RCCDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGN 154
           RC D    +D+ +  G+ T P+W   +  R + GGN
Sbjct: 430 RCTDDSPALDSSESVGKHTSPVWQLQWVDR-EQGGN 464


>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 2245

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 258 CCDQVTDIDA-FQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQ 118
           C D VT + A ++ F +   PI  Y +     D G  LTS+ NI++ Q
Sbjct: 719 CSDGVTRVRAKYEPFKDPESPIVKYEWKVVDVDTGTDLTSFTNILLSQ 766


>SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)
          Length = 960

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = +1

Query: 40  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 219
           G+R++   +L +     ++ VY +L  +D ++ V GE  +    + AV     W      
Sbjct: 726 GVRKVKSGELDVFISDHISLVYESLNDLDCELKVVGEPFAMSGASLAVKKGSPWFNALND 785

Query: 220 ALEGINVRDLITTSALEWV 276
            L+ +  +DL       WV
Sbjct: 786 VLQQLKSKDLTDFIQKFWV 804


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,071,178
Number of Sequences: 59808
Number of extensions: 199032
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)