Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20282
         (507 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    86   8e-17
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    86   8e-17
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    86   8e-17
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    86   8e-17
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    86   8e-17
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                85   1e-16
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                81   2e-15
AK128281-1|BAC87365.1|  121|Homo sapiens protein ( Homo sapiens ...    29   9.3  

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 85.8 bits (203), Expect = 8e-17
 Identities = 38/60 (63%), Positives = 49/60 (81%)
 Frame = +1

Query: 73  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 252
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 85.8 bits (203), Expect = 8e-17
 Identities = 38/60 (63%), Positives = 49/60 (81%)
 Frame = +1

Query: 73  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 252
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 85.8 bits (203), Expect = 8e-17
 Identities = 38/60 (63%), Positives = 49/60 (81%)
 Frame = +1

Query: 73  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 252
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 85.8 bits (203), Expect = 8e-17
 Identities = 38/60 (63%), Positives = 49/60 (81%)
 Frame = +1

Query: 73  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 252
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 85.8 bits (203), Expect = 8e-17
 Identities = 38/60 (63%), Positives = 49/60 (81%)
 Frame = +1

Query: 73  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 252
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 85.4 bits (202), Expect = 1e-16
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = +1

Query: 73  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 252
           M S +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 37/60 (61%), Positives = 48/60 (80%)
 Frame = +1

Query: 73  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 252
           M S +ELA +YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60


>AK128281-1|BAC87365.1|  121|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46418 fis, clone THYMU3012907. ).
          Length = 121

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 241 GH*CLPRLWRTDLANMA--LHLQPPLSRWWKFSHQLRQHHHPPG 116
           GH CLP   ++ LA  +  +H Q  L   W   HQ     HPPG
Sbjct: 5   GHCCLPGGAKSGLAGSSAPVHRQGRLRTVWAPQHQRVAPWHPPG 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,844,575
Number of Sequences: 237096
Number of extensions: 1053375
Number of successful extensions: 1683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)