Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20280
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   3.6  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   6.3  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   8.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   8.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.3  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 34  MSMMYQLSLHCLQKKHC---FLLNVFYLKSLLYRRNLHY 141
           +S +YQ+  +   KK     FL N+  LK    R+NL+Y
Sbjct: 63  ISNVYQILAYNFWKKKYWSEFLANLKLLKGRKIRKNLYY 101


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 317 SPLPAEVPLPRESPIPAES 373
           SPLP  VP+P+ +   A S
Sbjct: 194 SPLPLLVPIPQRTASTASS 212


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 206 DCGKWMVCLNGRFR 165
           DC K+ +CL G  R
Sbjct: 177 DCRKYYICLEGTAR 190


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 206 DCGKWMVCLNGRFR 165
           DC K+ +CL G  R
Sbjct: 177 DCRKYYICLEGTAR 190


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 227  GRYWVVIDCGKWMVCLNG 174
            G+Y+    C  + VC+NG
Sbjct: 1210 GQYYPHESCSSFYVCVNG 1227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,919
Number of Sequences: 336
Number of extensions: 3270
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)