Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20280
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.14
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 31 0.14
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.32
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.43
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 0.98
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.3
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 4.0
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 27 4.0
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 26 5.2
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 5.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.9
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 6.9
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 25 9.2
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 25 9.2
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 9.2
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 25 9.2
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 31.5 bits (68), Expect = 0.14
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 532 TEPENSLMSVSAEPLKMKDSL--ASISPE---PLEVKDPLATVIPEQLEEKESVTTEPLE 696
TEP SV+ EP ++ +S+ +IS E P P IPE E+K++ +
Sbjct: 944 TEPPVRASSVTVEPARVTESMNKMNISEEAKKPEAPSRPRTAPIPEPEEQKKAPVEKKDA 1003
Query: 697 VKDSQASVTAEP 732
K QA + A+P
Sbjct: 1004 EKSVQAPIPAQP 1015
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 305 SRSNSPLPAEVPLPRESPIPAESHIPVDDLITSIE 409
SR+NSP P +PLP + + + H PV ++ S E
Sbjct: 1047 SRNNSPRPDFLPLPNQPLLHSNLHSPVSPVVDSNE 1081
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 30.3 bits (65), Expect = 0.32
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 320 PLPAEVPLPRESPIPAESHIPVDDLITSIETPLESTIQEVASVDDQPEVEREKSDVPLEP 499
PLP E PLP E P+P E +P + + + P E+ + + + D+ E K+D P
Sbjct: 118 PLPGEPPLPDE-PVP-EEPLPGEPPLPNEPVP-ETNCHKESPLSDETVSETSKNDTSNSP 174
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 320 PLPAEVPLPRESPIPAE 370
PLP E PLP E P+P E
Sbjct: 102 PLPREPPLPNE-PVPEE 117
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 29.9 bits (64), Expect = 0.43
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 523 MESTEPENSLMSVSAEPLKMKDSLASISPEPLEVKDPL--ATVIPEQLEEKESVTTEPLE 696
MES S +++E LK S +I P +PL + +IP E+ L
Sbjct: 275 MESLSLARSSPILTSEKLKNGASKQAIESPPFRASEPLPSSNIIPNPAMERLKNGASKLA 334
Query: 697 VKDSQASVTAEPLEVKDPL 753
+ +SQ +AEPL PL
Sbjct: 335 I-ESQPFKSAEPLSSAIPL 352
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 28.7 bits (61), Expect = 0.98
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 499 GPYEVVEPMESTEPENSLMSVSAEPLKMKDSLASISPEPL--EVKDPLATVIPEQLEEKE 672
G E E E+ +P + + +P + + A EP E ++P E+ EE+E
Sbjct: 84 GADEKEEKKETIQPPEEVKTEPPQPEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEE 143
Query: 673 SVTTEPLEVKDSQASVTAEPLEVK 744
T+PLE + + EVK
Sbjct: 144 EEITDPLEKMTQECMDAPDCKEVK 167
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 284 SVKVTKDSRSNSPLPAEVPLPRESPIPAESHIPVDDLITSIETPLESTI 430
SV + SNS +P P+P S P S I + I S + STI
Sbjct: 102 SVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISASTI 150
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 523 MESTEPENSLMSVSAEPLKMKDSLASISPEPLEVKDPLATVIP 651
+E TEP NSL S + L ++L S P D L V P
Sbjct: 276 LERTEPPNSLNSKISYSLYCNETLVSFFRRPAFSPDGLLLVTP 318
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 404 IETPLESTIQEVASVDDQPEVEREKSDVPLE 496
I TP T+ E S +++ +E KS +PL+
Sbjct: 335 ISTPYLRTLNETRSKNEKKALESRKSSIPLQ 365
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Frame = +2
Query: 293 VTKDSRSNSPLPAEVPLPRESPIPAESHI---PVDD--LITSIETPLESTIQEVASVDDQ 457
VT+ R +P+ P P SP+ + P ++ L S E P + + E V+++
Sbjct: 481 VTQPKREKTPVEKSFPKPASSPVTFSEDVKKEPSEEKKLEVSDEAPKAAPLAESKKVEEK 540
Query: 458 PE--VEREKSDV 487
V ++K D+
Sbjct: 541 EPFYVSKDKKDI 552
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 344 PRESPIPAESHIPVDDLITSIETPLESTIQEVASVDDQPEVEREKSDVPLE 496
P + PA+ P DD+ IE +QE +D E VP E
Sbjct: 26 PAHAAAPAQDDEPDDDIDALIEELFSEDVQEEQEDNDDAPAAGEAKAVPEE 76
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 6.9
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +1
Query: 526 ESTEPENSLMSVSAEPLKMKDSLASISPEPLEVKDPLATVIPEQLEEKESVTT---EPLE 696
+S PEN+ ++S+ MKDS S T + EQLE + ++ T +P
Sbjct: 175 DSAIPENAA-NLSSSSKNMKDSTLSSQKARSNTSSSFLTPLHEQLESRCALHTAAKDPFR 233
Query: 697 VKDS-QASVTAEPLEVKD--PLASTNYSKR 777
K+S + + PL + P S N S++
Sbjct: 234 SKNSLRCNRGHSPLSSQQILPAISNNTSEK 263
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +2
Query: 278 DESVKVTKDSRSNSPLPAEVPLPRESPIPAESHIPVDDLITSIETPLESTIQEVASVDDQ 457
+E+ K ++S SP+ L R+ + + IP +S E+T+Q+ AS ++
Sbjct: 274 EENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSSEE 333
Query: 458 PEVE 469
V+
Sbjct: 334 EAVK 337
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 517 EPMESTEPENSLMSVSAEPLKMKDSLASISPEPLEVKDPL-ATVIPEQLEEKESVTTEPL 693
EP +++ P + + + + LA+ P P++V D V EQ++ T P
Sbjct: 367 EPNQNSLPNPPTETKATTTVPDRSGLATNQPAPVDVHDSSEERVTREQVQNATKETEAPK 426
Query: 694 EVKDSQASV 720
+ K AS+
Sbjct: 427 KKKSFWASI 435
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 233 QGGRYWVVIDCGKWMVCLNGRFRFRSNIL 147
Q GR WV I CG + + ++F+ +L
Sbjct: 242 QSGRMWVGIFCGGVLTAILMMYKFKGAVL 270
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 517 EPMESTEPENSLMSVSAEPLKMKDSLASISPEPLEVKDP 633
E S + ++SL S ++PL M + L + + + DP
Sbjct: 257 ETQPSNQVDDSLKSKDSKPLTMSEVLTQLPEDDIPFDDP 295
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 477 NPTSPSNRSVRGSRTYGIDRTGEFID 554
+P + +R RGSR ++ +G+FI+
Sbjct: 171 DPRTKESRKTRGSRNLHLNESGKFIE 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,294
Number of Sequences: 5004
Number of extensions: 54418
Number of successful extensions: 245
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -