Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20280
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961... 40 0.002
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 33 0.19
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395... 31 0.77
03_02_0572 + 9569578-9570534 31 1.0
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 31 1.3
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 30 1.8
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 30 2.4
05_05_0173 + 22956927-22958615 30 2.4
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 29 3.1
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 3.1
10_08_0272 - 16387422-16387427,16387428-16387526,16387688-163881... 29 4.1
09_04_0559 + 18516732-18516746,18516893-18517330 29 5.4
04_01_0614 + 8049199-8049579 28 7.2
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 28 7.2
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 28 7.2
02_02_0328 - 9004670-9004753,9004873-9004947,9005031-9005132,900... 28 7.2
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 28 7.2
>04_03_1036 -
21895764-21895817,21895928-21895975,21896051-21896154,
21896624-21896721,21897838-21897916,21898039-21898102,
21898176-21898294,21898434-21898686,21899273-21899279,
21899956-21900013,21900300-21900353,21900863-21901055
Length = 376
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 505 YEVVEPMESTEPENSLMSVSAEPLKMKDSL--ASISPEPLEVKDPLATVIPEQLEEKE-S 675
Y +P + T P+++ + VSA ++ +L A ++ +P + K V PE+L++KE
Sbjct: 146 YPYSQPRKDTSPQSATVDVSATKVEATGTLEEADVAEQP-KKKFAFVDVSPEELQQKELQ 204
Query: 676 VTTEPLEVK-DSQASVTAEPLEVKDPLASTNY 768
+ E ++VK +S+ S T E E K P T +
Sbjct: 205 SSLETVDVKSESKQSETMEDTEQKAPTNGTAF 236
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 293 VTKDSRSNSPLPAEVPLPRESPIPAESHIPVDDLITSIETPLESTIQEVASVDDQPEVER 472
V K ++ +P E+PLP P+P + HIP + + ++P++ E A + PE +
Sbjct: 156 VAKGKKAVDSVPTELPLPPPPPLPPQDHIP--ERLAVEKSPMD---VEPAVASESPEQLQ 210
Query: 473 EKSD 484
E ++
Sbjct: 211 EHAE 214
>03_05_0710 +
27038709-27038865,27039205-27039346,27039383-27039558,
27039639-27039703,27040000-27040371,27040429-27040504,
27040505-27040571,27040672-27040825,27041122-27041289,
27041392-27041502,27041612-27041722,27041864-27041881,
27041917-27042018,27042587-27042817,27043390-27043464,
27043744-27043815,27044597-27044782,27044868-27045026,
27045251-27045343,27045730-27045801,27046336-27046426,
27046669-27046847,27047252-27047333,27047526-27047636,
27047715-27047821,27048194-27048271,27048357-27048452,
27048627-27048722,27048839-27048856
Length = 1154
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 317 SPLPAEVPLPRESPIPAESHIPVDDLITSIETPLESTIQEVASVDDQPEVEREKSD 484
+P P +P P P P H PV S +S ++ ++DD + E E+ +
Sbjct: 213 APSPVVIPAPIVDPPPVAVHSPVSTTNLSKSQSFDSPTEKELTIDDIEDFEDEEDE 268
>03_02_0572 + 9569578-9570534
Length = 318
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 290 KVTKDSRSNSPLPAEVPLPRESPIPAESHIPVDDLITSIETP 415
+V ++ + +P PAE P+ P+PA + P D ++ P
Sbjct: 25 RVLEEQPAAAPAPAEAPVAPVDPLPAPTDPPADTVVAPAAVP 66
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +1
Query: 508 EVVEPMESTEPENSLMSVSAEPLKMKDSLASISPEPLEVKDPLATVIPEQLEEKESVTTE 687
E +EP E EPE + + EP +++ + PE + ++ + ++ E+E+ +
Sbjct: 130 EAIEPEEDEEPEEAEVEEDEEPEELE--MEEEEPEDADSEESMEEEAGSEVSEEEAAADD 187
Query: 688 PLEVKDSQA 714
E+ D +
Sbjct: 188 MKEIADKDS 196
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 529 STEPENSLMSVSAEPLKMKDSLASISPEPLEVKDPLATVIPEQLE 663
+TEP S ++ E L D++ I L + DPL +IP L+
Sbjct: 776 TTEPGTSTDCIAVEDLNKMDAIHIIDFSDLSIGDPLCDLIPLHLD 820
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +1
Query: 544 NSLMSVSAEPLKMKDSLASISPEPLEVKDPLATVIPEQLEEKESVTTEPLEVKDSQASVT 723
N V+ +++ ++ S SP+ +KD L T + +Q ++ + +E +
Sbjct: 234 NEAFEVARNSVELLSTVLSSSPQKEALKDDLTTTLVQQCQQCQRTIQRIIETAGDNEAQL 293
Query: 724 AEPLEVKDPL 753
E L V D L
Sbjct: 294 FEALSVHDEL 303
>05_05_0173 + 22956927-22958615
Length = 562
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 520 PMESTEPENSLMSVSAEPLKMKDSLASISPEPLEVKDPLATVIPE 654
PM S+ P +S S A PL+ + SP P E+ P T +PE
Sbjct: 41 PMLSSSPSSSAASADAPPLETEPLHPPYSPPPAELVRP-PTPLPE 84
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 371 SHI--PVDDLITSIETPLESTIQEVASVDDQPEVEREKSDVPLEP 499
SH+ PV+ + I L + V ++ Q ++ SDVPLEP
Sbjct: 363 SHVVEPVERSFSKINRTLHQISENVKQLEKQKRKAKDDSDVPLEP 407
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Frame = +2
Query: 290 KVTKDSRSNSPLPAEVPLPRESPIPAESHIPVDDLIT------SIETPLESTIQEVASVD 451
K +K + + P P VPLP+ IPA P T + P+ A++
Sbjct: 743 KASKPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATTAAPVGAAAAPISEPTAPAAAIG 802
Query: 452 DQPEVEREKSDVPLEP 499
R S +P EP
Sbjct: 803 MPSATARAASCLPTEP 818
>10_08_0272 -
16387422-16387427,16387428-16387526,16387688-16388122,
16388408-16388738,16390821-16390961,16391668-16391736,
16392077-16392312
Length = 438
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -2
Query: 771 RVVCRRQGVFHFKRFRSYRRLRVLHFERLRSYRLLFFELF 652
++ CRR F +RFRSYR F R R++R+L LF
Sbjct: 38 QISCRRDRSFSQERFRSYR------FPRARAHRILATFLF 71
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 517 EPMESTEPENSLMSVSAEPLKMKDSLASISPEPLEVKD--PLATVIPEQLEEKESVTTEP 690
E ++ EPE + AEP K + + + E K+ P A V E EE+ +
Sbjct: 72 EEVKEAEPEPA--EPEAEPAKEEVAPEPAAAAEAEAKEAEPAAQVAEEVKEEEAAPAPAA 129
Query: 691 LEVKDSQASVTAEP 732
EVK +A+ AEP
Sbjct: 130 EEVKVEEAAPVAEP 143
>04_01_0614 + 8049199-8049579
Length = 126
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 305 SRSN--SPLPAEVPLPRESPIPAESHIPVDDLITSIETPLESTIQEVASVDDQPEVEREK 478
SR N S LP++ P+ SP P+ P + ++ PLEST+ +S+ D+ ++
Sbjct: 12 SRGNHLSTLPSDTPVYGPSPSPS----PSNATLSGPTAPLESTVISTSSLRDRESRDKNN 67
Query: 479 S 481
+
Sbjct: 68 A 68
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 320 PLPAEVPLPRESPIPAE---SHIPVDDLITSIETPLESTIQEVASVDDQPEVEREKSDVP 490
PLP++VP P P P + ++ P ++S E+ LES+ ++V D+ +V+R K +
Sbjct: 194 PLPSQVPAPPPPPPPPQPSAANKPHLTDLSSDESELESSDEDV----DKRKVKRTKHEAI 249
Query: 491 LEP 499
+ P
Sbjct: 250 VGP 252
>02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 541 ENSLMSVSAEPLKMKDSLASISPEPLEVKDPLATVIPEQLEEKESVTTEPLEVKDSQASV 720
+NS+++++A ++ S +SP +V + P + ++ E T ++ DS S+
Sbjct: 821 DNSMITMAATSVESSVSADKVSPVEGQVTEAAVEHAPVEKDQCEEPNTTIVDSGDSSVSL 880
Query: 721 TAEPLEVKDPLAS 759
E L+ D S
Sbjct: 881 KNEELQDHDQAPS 893
>02_02_0328 -
9004670-9004753,9004873-9004947,9005031-9005132,
9005681-9005761,9006233-9006535
Length = 214
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 604 SPEPLEVKDPLATVIPEQLEEKESVTTEPLEVKDSQA 714
+P P+E + V E++EE+E+ EP+E + + A
Sbjct: 52 APAPVEAEAEAEVVEEEEVEEEEAAVPEPVEAQIAAA 88
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 305 SRSNSPLPAEVPL-PRESPIPAE-SHIPVDDLITSIETPLESTIQEVASVDDQPEVEREK 478
S SNS +P P P S + + SH+ +S E P A+ + P+ R
Sbjct: 221 SASNSGMPTSQPAAPSHSYMESSNSHMSTAHSYSSAEVPDNRAPYVTANSNAFPQENRRG 280
Query: 479 SDVPLEP 499
SD P+ P
Sbjct: 281 SDAPMSP 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,024,552
Number of Sequences: 37544
Number of extensions: 352264
Number of successful extensions: 1432
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -