Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20279
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    28   0.095
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.67 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   4.7  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   4.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   6.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   6.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   6.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   6.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   6.2  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   6.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   6.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   6.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 176 TMSCVSPPRNTQSCSLRLPSTPRPTEKDDPDHV--RNIQHARHVRRHPSRALAV 331
           ++ CV PP  T+ C +     P P E+DD  ++   N ++ +H    P  A+ V
Sbjct: 196 SLRCVVPP--TEDCDVPSTIPPPPPEEDDDSNIPQNNPKNKQHNFNLPPGAIPV 247



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 325 RCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSP 420
           R  R VVPP   C  P+T+ P P     D++ P
Sbjct: 195 RSLRCVVPPTEDCDVPSTIPPPPPEEDDDSNIP 227


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 127 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 222
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +1

Query: 265 RSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           +  + +S   P  S        T  + P ++CW   +++ +P P  + +  PTPS
Sbjct: 292 QQATPYSAPGPTYSTWSTVQTPTTVMSPTINCW---SLTSSPPPPYQISAQPTPS 343


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +1

Query: 214 LLTEAPLNPKANRER*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPP 351
           +++  PL P  +        +K +T+P     +KP      P  PP
Sbjct: 155 VISSTPLPPTTSTTTRTTLTTKFTTKPSTKPTNKPVVVTKPPQAPP 200


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 96  PDPQIPHRTRNRH 134
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = +2

Query: 191 SPPRNTQSCSLRLPSTPRPTEKDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRY 355
           SP  NT +      + P   ++   D    +   +H   HP ++ A +    H Y
Sbjct: 64  SPCNNTANYKSEAQNQPSSYKQPSSDMADVLLSLKHAVVHPGQSPAEKYDQQHLY 118


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 292 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASS 172


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 292 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 292 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 292 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 292 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 292 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 83  PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 128


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 292 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 292 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 429
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 386 HRAHLRRIRTPPRHPASGLSRSRP 457
           H+A +R +  PP+       RS P
Sbjct: 62  HKAPIRPVALPPKREIPSPKRSSP 85


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 165 MPNLLHVIPVSDDSVFD 115
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 165 MPNLLHVIPVSDDSVFD 115
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 165 MPNLLHVIPVSDDSVFD 115
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 165 MPNLLHVIPVSDDSVFD 115
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,119
Number of Sequences: 336
Number of extensions: 5059
Number of successful extensions: 28
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)